MmuINT0092827 @ mm9
Intron Retention
Gene
ENSMUSG00000033728 | Lrrc14
Description
leucine rich repeat containing 14 [Source:MGI Symbol;Acc:MGI:2445060]
Coordinates
chr15:76543297-76544415:+
Coord C1 exon
chr15:76543297-76543650
Coord A exon
chr15:76543651-76543830
Coord C2 exon
chr15:76543831-76544415
Length
180 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CTGCCCATCCCTGCTCCCAGGAA
3' ss Score
8.25
Exon sequences
Seq C1 exon
GTGGCTGTCTGCCCAGTCCAGCACCATGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCCTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCCCTGCTGCCCCGGGAACTCTTCCCTCTGCTCTTCAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGGCTGACAGCTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAG
Seq A exon
GTATGCATTTATCTAGGGGGCCCATAGGCTAGGGGTACAAGGAAGATCCCCTGAGTTGTGGTTCTGAGATCAGAAAGAGCTCCCTCCATATGGGGATATCTGTTGCTTCTGTACAAAGTAGCTGGGAGGGATGCTGGCCTTTCTCCTTCACTCCCTCCCTCTGCCCATCCCTGCTCCCAG
Seq C2 exon
GAAGCATGCATTGCGGGTTCTGGACATGACGGGTCTCCTGGATGATGGTGTGGAGCAGGATCCTGAAACCATGAGCATGTGGGACTGTACAGCCGCTGTAGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGCCGAGCCAGGGCTGTCACCAGTCCCCGTGGAAATCCGAGTAGACCTTCGGGTAAACCGGGCCTCGTACACATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACCTGCGGGCTGAGGATCTACCCATGCGTAACACTGTGGCCCTGCTACAGCTTTTAGATGCAGGCTGTCTGCGCCGGATAGACCTGCGCTTCAATAACCTGGGCTTGCGTGGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTTCAGCACTTAGCTAGCCTGAGGCTGCACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGGACGGGGAGGACAACTTTCGCTACTTTCTGGCCCAGATGGGCCGGTTTATGTGTCTTCGGGAGCTCAGCATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033728-Lrrc14:NM_145471:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAACAGAGGCTGGCAC
R:
CGAAGGAATGTGTACGAGGCC
Band lengths:
252-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: