HsaINT0096751 @ hg19
Intron Retention
Gene
ENSG00000177021 | LRRC24
Description
NA
Coordinates
chr8:145749494-145750103:-
Coord C1 exon
chr8:145749825-145750103
Coord A exon
chr8:145749663-145749824
Coord C2 exon
chr8:145749494-145749662
Length
162 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
ATCTGCTGTCCTTACTTCAGCGA
3' ss Score
7.57
Exon sequences
Seq C1 exon
ACACTGTTCCTGCAGGACAACAACATCGCCCGCCTAGAGCCGGGAGCCCTGGCGCCACTCGCCGCTCTGCGCCGGCTCTACCTGCACAACAACAGCCTGCGCGCCCTGGAGGCCGGCGCCTTCCGCGCGCAGCCGCGCCTGCTGGAGCTGGCGCTCACTAGCAACCGGCTGCGCGGCTTGCGCAGCGGCGCCTTCGTAGGCCTGGCCCAGCTGCGCGTGCTCTACCTGGCGGGCAACCAGCTGGCGCGGCTGCTGGATTTCACCTTCTTGCACCTGCCG
Seq A exon
GTGAGCGCCTGGGGTCTAAAGGGGCGGGATACTCCATTATGGCCCCTCGCCCTGTAGGGCTGGAATAGTTAGAAAAGGCAACCCAGTCTAGCTTGGTAAGAAGAGAGACATGCCCCCAACCTCGGCGCCCTTTTTCCTCACGATCTGCTGTCCTTACTTCAG
Seq C2 exon
CGACTGCAGGAGCTTCACCTGCAAGAAAACAGCATTGAGCTGCTGGAGGACCAGGCTCTAGCGGGGCTGTCCTCCCTAGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGAGAGGCCCTGCAGCCCCTGGCCAGTCTGCAAGTCCTGCGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177021-LRRC24:NM_001024678:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCACAACAACAGCCTG
R:
TGGTCCTCCAGCAGCTCAAT
Band lengths:
254-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)