MmuINT0092936 @ mm10
Intron Retention
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76717923-76718500:-
Coord C1 exon
chr15:76718222-76718500
Coord A exon
chr15:76718092-76718221
Coord C2 exon
chr15:76717923-76718091
Length
130 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
ATTTCTTGTCGGTACTTCAGCGA
3' ss Score
4.46
Exon sequences
Seq C1 exon
ACACTGTTCCTGCAAGACAACAGCATCGCGCACCTGGAGCAAGGCTCCCTGGCACCTCTTGCTGCCCTGCGCCACCTCTACCTGCACAACAATACCCTGCGTGCGCTGGAGTCCGGTGCCTTCCGCGCACAGCCTCGCCTGCTTGAACTGGCGCTCACTGGCAACCGGCTTCGGGGATTGCGTGGCGGCGCATTTGTGGGCTTGGTCCAGCTTCGTGTGCTTTACCTGGCTGGAAACCAGCTGGCAAAGCTGCTGGATTTCACCTTCTTGCACCTGCCG
Seq A exon
GTAAGCTACAAACGCCAACACTTCTGTATCTTGCTGCGATATCCCAACTGCCCTGCTGCTAGGAGAGGTTAGGAGGGAGAGTCAACCTTGACTAGTCCTTTTCCCTGATGATTTCTTGTCGGTACTTCAG
Seq C2 exon
CGACTACAGGAACTTCATCTTCAAGAAAACAGCATTGAATTACTGGAGGACCAGGCCCTGGCTGGGCTTTCCTCCTTAGCCCTACTGGACCTCAGCAGGAACCAACTGGGCACCATCAGCAAGGAGGCCCTGCAGCCTCTGAGCAGCCTACAAGTGCTACGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707:ENSMUST00000049956:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=63.4),PF138551=LRR_8=PU(0.1=0.0)
A:
NA
C2:
PF138551=LRR_8=FE(93.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTGGGCTTGGTCCAGC
R:
GCACTTGTAGGCTGCTCAGAG
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types