DreINT0090972 @ danRer10
Intron Retention
Gene
ENSDARG00000101704 | lrrc24
Description
leucine rich repeat containing 24 [Source:ZFIN;Acc:ZDB-GENE-060503-496]
Coordinates
chr2:51457758-51461439:+
Coord C1 exon
chr2:51457758-51458036
Coord A exon
chr2:51458037-51461270
Coord C2 exon
chr2:51461271-51461439
Length
3234 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TGTTAATGCACTGTTTGCAGCGG
3' ss Score
6.14
Exon sequences
Seq C1 exon
ACCATTTTTCTGCAGGACAATGCCATCGGTCAGATCCGCCAACGGGACCTGTCTGACCTGGGCCAGCTACACTACCTCTACCTGCAGAACAACAGCATCAGCACGCTGGAGCCCGGGGCCTTCAGGAGCCTCGGTCTGCTTCTGGAGCTGGCTCTCAACGGGAACCGCATTCACCTGATCACGGCAGACGTATTTCGGGGCCTCGATCACCTGCGCATCTTGTACCTTGCAGGAAACCAAATCAACAGACTGGAGGATTACACCTTCCGCGGACTGCAG
Seq A exon
GTACACCAGCGGCTGTCTGCGCATTCACAAACGCTTTACTGCAAAGGGGGTCAAACTCAAACCTTTGCTGAAACTTAGTTTAAGTCAAGACCACAGGTGAGTGGGCTTGACAAACCACCTGTAGGACACACTCTCTCCTTTTCTGTATGCTCAGAGGCGGGGGGGGGGGGGGGGGGACGTAGAATTGTCATAGCATTTCATAAGTTTACATTTAGGTATTGCTTGACACTATTACAGTAGCAGGTTTGACATGCTGTCCTGAGAGAGTACCCCGAGCTCAGAGATAATCGAGCCTAGGGCTCCTGCCTGGTCAATTAGCATGTAAGGAGATCCAAGATCAGGTAGGTCTCGAGAGCTCCCCCTGGTAAAAGGAGAAAAAGTAGGAGATGGGGGGGAAGGGGTATTCTTCCGACACGAAGAGAAGCAGCAGGGCGAAATCAGTCTATTTATTGTGGGCTTGGATGAATCTGATTGGATTATTGCTGATTACGGATATGAGACCAGCCGTGATCAATTATTTCACATGCTCCTCTCGAAATTAGTTTGTGAAACTTCACTTATATACAGAAATTCTCTGATGATTTTTAAGCTGCTTTGGATAGATAGATAGACAGATACATATTTTCTATGGTAAGCTATAGAATACTATAGTTGCGCATAAACATTATATTAGTCAGTACTGAAGCCAAATCTGCTTATCTTAAAGAGCCCATATTATGGGTTTTTGAAAATTCCCCTCCATGTAGTGTGTAACACAGCTCTAAGTGAAGTGAAGTATCCAGCTAAGGCTTAAATCTGTAAGAATACAGTGTTTAAAACTGTTGATTCATCTATAAAAGAGTCGAATCATAGTGCTTCAAACGAGTCGCCTTGATACCGACTCATTAGGTGTTTCGCCATGACGTACGAACGAAACAAAGTTTTTCACGTGCACGCGCAAACCCGGGAGATTTCAAACCTGAGGCCCCGCCCTCTGACGCAGTAACCCAGACACACACACACACACACCCACAAACACACGCACACCCACAAACACACGCACACAAACATGCCGGTCGATTGAAGTCACACTGCAGATGGATATATTGAGTCTCTACCCAAAGATGAAACCTCAGCATTATAACCAAGCAGTTGGAAACTTCTGGAAGCTACATGCTACAAAGAATACTTCATCTGAGTTTGTTAAAGGAAGGATCAGTAAAGAGTAACTGATGGACGTCAGGATGGGTTTCTTCCTACATTTCTCAAGTGTAAGTACGTGCGGTTAAAGTTGTTGCCTCGTTTACTCTAGCTTGCAAATGTATTTAGTTGTGATTTGTTACTTGTAACCGCGTGTACTGTATCAGGTTAACTGGATATATTATCTTATCGCGTGCAAAGTCACGTTAAAAACGCGACGCGTGCTGTTTGTTTATGGAGCTCCGTGCTAGAGTTCTGCTCCCGCGATTTATTCGGAAATGTATTCCCGCGCCGCAGAAATCTGGCGCGGGGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGCGAACGAACGAACGAGCTTTGTGTACTTTGTGCTGTGTGTGTGTTTTTATACAGACACCTTGGCTGTCTGGACTGTATACTGGGTGATATTTGGTTGTGTTCTCCGCTCTAGCGGGACCGGGCGCGGCGGGCAGAAAACGGAACGGGTTCTCAGGCTAAAACCTGGCGGGTGCGGGCTGAAGCAGGAGCGTTGTCATCCGGAGGTGTGTGTGTGTTTTTGTGTGTGTGTGGTATGGCGAGTACACGACTGTCTCCTTCGTTCGGTTATCCGTGGCACTATCCACTGGCCATAGTGTGGCAGCTAAAGTCCACGCCTACACTATCGAGCGTGTATGAACTGTGATTACTTTTTAAATTGCTGATTAGCTATTGGCCATTTCCCTCTCTGACTGAAGGCAGTCGACCAATCGCGACAGACTGTCATCGGCCCAATCAGCGCAGATTAGCTCCGCGCTAAGGAGGGGTTTGGGAACAAATGAATCACTGGACGATTCATACAGGAGTCGCTGGGATAATTAGGTAAAAATAAATGCAGATTATAAGACCATGAAAGTGTTTTTTGACCTTGCATGCATATTAGACTGTTGTTGGAGACCCTTACAACCAAGATATGACCTTATTTCATGTATAATATGGGCTCTTTAACAAAATAACTGATCACAGTCCAAAATGAATACACCCAAATTTATATATTAGAAAAAAAACAAATGAAAAATATAGCAAAAATCAAGAGAAACAAAAAATGTATAAAATGTTGTTGAAATTTGTTAGATTATATTTTTCCACTATTTTACATAAATTTGAATGCATTGTCTTTTGTTTTCAGTGACAACAATATTATTTTAATAAATATATCTATTTAAATTGATTTTGTTCAAATACACTAAAATACATTGCCTATATTCACTGAGAAATTGATTTATTTACTGTCTGCTCTACCAAATGGTTGACCATATTTTGACTGTTTTAAATAATGGTTTACACACGCACACGCACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATAAATATATATACACATACACACACACACACACACATATATATATATGTGCACTATACACTATACACACATACGCACTATATGTATGTGTGCAATTTTTGTGTTCGTGTTTAACATCAGTATTTTAACATAATATTCCGTCATCGTTTACTCAAAGTGTAAGTTTGTTCACTAATGTGGTTAACAAATCTTGCTTAAGGTGTTTTTCACATTCTTCTTTTTGTTTAAACCTTGTGCAAATGTTTTACCCTGACACTGAGAACGACATGAAATACTAATATCCACATGTGTGCTTGTATCAGTAAATTAATTTTTAAAATTAAAATTTCTACATAAGCTTTACATAAAGTTTAACCACATAAAGCGTGCACAAGCTCATGAGAGTGAAAGAGAAGTGCAAACCACAGAAAAGCAGTAAAAAAACTGCAAAAAGCCATAAAACGCTAAATTAAAAAGGACTTTTTCAGCAATATGCAAATTAAACGGAGACGCTCAGCTGAAAACTGATGATGCTGCATAGAGCCAGAATGCTTTAGAAAGTGTGTTTTTATGATAGCCGCGATTATGCTCACCGTAATAACCGTATTGAAATGTTAATGCACTGTTTGCAG
Seq C2 exon
CGGCTGCAGGAGCTTCATCTGCAGGAGAATGTGCTGGAGGTGCTGGGAGATCAGGCTCTGGTGGGACTGTCCTCGCTGGCTCTTCTGGACCTCAGCCGAAATAACCTGAGAACTCTGAGTCCCGCTTCACTGAAGCCTCTGGTCAGCCTGCAGGTGCTGAGAGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101704:ENSDART00000167430:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(91.8=60.2),PF138551=LRR_8=PU(0.1=0.0)
A:
NA
C2:
PF138551=LRR_8=PU(93.3=98.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]