HsaINT1022053 @ hg38
Intron Retention
Gene
ENSG00000254402 | LRRC24
Description
leucine rich repeat containing 24 [Source:HGNC Symbol;Acc:HGNC:28947]
Coordinates
chr8:144524110-144524719:-
Coord C1 exon
chr8:144524441-144524719
Coord A exon
chr8:144524279-144524440
Coord C2 exon
chr8:144524110-144524278
Length
162 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
ATCTGCTGTCCTTACTTCAGCGA
3' ss Score
7.57
Exon sequences
Seq C1 exon
ACACTGTTCCTGCAGGACAACAACATCGCCCGCCTAGAGCCGGGAGCCCTGGCGCCACTCGCCGCTCTGCGCCGGCTCTACCTGCACAACAACAGCCTGCGCGCCCTGGAGGCCGGCGCCTTCCGCGCGCAGCCGCGCCTGCTGGAGCTGGCGCTCACTAGCAACCGGCTGCGCGGCTTGCGCAGCGGCGCCTTCGTAGGCCTGGCCCAGCTGCGCGTGCTCTACCTGGCGGGCAACCAGCTGGCGCGGCTGCTGGATTTCACCTTCTTGCACCTGCCG
Seq A exon
GTGAGCGCCTGGGGTCTAAAGGGGCGGGATACTCCATTATGGCCCCTCGCCCTGTAGGGCTGGAATAGTTAGAAAAGGCAACCCAGTCTAGCTTGGTAAGAAGAGAGACATGCCCCCAACCTCGGCGCCCTTTTTCCTCACGATCTGCTGTCCTTACTTCAG
Seq C2 exon
CGACTGCAGGAGCTTCACCTGCAAGAAAACAGCATTGAGCTGCTGGAGGACCAGGCTCTAGCGGGGCTGTCCTCCCTAGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGAGAGGCCCTGCAGCCCCTGGCCAGTCTGCAAGTCCTGCGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254402:ENST00000529415:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=65.6),PF138551=LRR_8=PU(0.1=0.0)
A:
NA
C2:
PF138551=LRR_8=FE(93.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCACAACAACAGCCTG
R:
TGGTCCTCCAGCAGCTCAAT
Band lengths:
254-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains