HsaINT0097323 @ hg38
Intron Retention
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr9:127457316-127459071:+
Coord C1 exon
chr9:127457316-127457393
Coord A exon
chr9:127457394-127459002
Coord C2 exon
chr9:127459003-127459071
Length
1609 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CAGGGGTCTTTCTTCTGCAGGTT
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTGCTGATCGTCCACACGAATCACCTCACTTCCCTGCTTCCCAAATCCTGCAGCCTCCTGAGTCTGGCAACCATCAAG
Seq A exon
GTACTGGGCCCTCCTCCCAGGCAGCTGGGGCTCTGCATGGGGTTCCACGCGGCAGCTGAGCGCCTGCTCCTTTTGGGCTGCCTCTTGCATGTCAGAGGGGCCCAATCTACCAGTCAGTCTGGGATTTGATCAGTATGGTTTACTGGATACTTCTGTGGGCTGTGTGTGGGTTAGGGTGACAAAGATGACCAGCCACAGGCCCTGTCCCTGGGGAGTTTACATGCCAGGAGGAAAGCCAAGTGACAGCCTCATGGCGAGTCAGCTAGCAGAGGGCGAGGAGACTGATGGTCCCAGGCAAGAAGGAAGAGGAGGGACGCGCAGGTGATCTGGAAGGACTCCCTGCTGACTGTGAGCTCCTCCCCGGATGGGCTGGGAGGCATTCACAACATGTGGGAGGTGTGAGCCCAGGGTTGTTATGCGCAGACCTGAGCTTGGGAGAGTGATATGCACCTTCAGAGGAGGCCGGCAGCACAGGTGTCAGCCCAGCAGCACAGGCCCAATCTGTTATACTATATTGTTTAGGGAATAATGACAAGAGAAAAGCCTGTATGTGTTCACTACAGATGCTTTCTTTCTTTTTTTTTTTTTTAATATTTTGCACCTGAGTTTGGTTGAATCCATAGATATGGAGGGTACCTGTGTGTGCACATGTATAAATATTTCTCCAAGGCCTTTTTTGTGCATTTTCATTTTTAAAAAATTAGCAGTCAGTCGTGGTGGCTCACACCCATAATCCTAGCACTTTGGGAGGCCAAGGCGGGTGGGTCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCGTGGGCGACAGAGCGAGACTTCGTCTCAAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAAAACACCAGCAGAGCATGTTGGCTTGTGCTTGTAATCCCAGCTACTTGGGAGGCTGAGGCACGAGAATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGGTCGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAATAAAACAAAATAAAATAAAATTAAATTAAAAATTAGCAAGTACAGTTAAGCAAAGGGGGAAACATCTATAATTTTACACTGTGGAGTACCACTGTCAATATTTTATCGCATATTTGAAAGTCTTACATATTTATACAATGGAGTGTTTCTTTTTAACATATTAGTATCTAGGCATACTGTTTTATAGCATAGTTTTTCAGTTAACAGTAAAAATAAATATACATAAAATAAGAAAATGGTATAATGGTTTGAGAAGGAAAATGAGGCGGGAATGATCAACACTGAGTGGGAAAGGAGTGGCAGGCACTCTGTTTCTGCACTGGGGGTGTGAGGTGGCCCCAGCCCCTCCTCAGCGCTCTGGAGCCCGGAGTCTGAGGGACTTTCTCACTTGGAGACTCACAGGGGTCTTTCTTCTGCAG
Seq C2 exon
GTTCTAGATCTCCACGATAATCAGCTGACAGCCCTTCCTGACGATCTGGGGCAGCTGACTGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356:ENST00000300417:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(46.2=92.3)
A:
NA
C2:
PF127992=LRR_4=FE(46.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development