GgaINT0124709 @ galGal4
Intron Retention
Gene
ENSGALG00000008819 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr17:1549021-1549696:-
Coord C1 exon
chr17:1549619-1549696
Coord A exon
chr17:1549090-1549618
Coord C2 exon
chr17:1549021-1549089
Length
529 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
GAAATTATCTGTTCTTCCAGGTT
3' ss Score
8.3
Exon sequences
Seq C1 exon
GTGCTGATTATTCATACAAATAATCTTACATCTTTAGTTCCAAAGTCCTGTAGCCTCCTGAGTCTCATAACTGTGAAG
Seq A exon
GTAACTGTGACTTTTATCAGTCATTCTAGCTGCATTAAAACACACTAGCCCCCAAAAATTCCTCCTGTCTGGCTGTTGTTACCAAAAAGTGGTAACAAAATGTGACGGCTCCATTTTGTAGATTTACAAAACCTGGTGGATCACTTGAATGTGGATGAGACTGGTGGTGGGGCCATCTGATTTTGGTCTTTCTGTGGAGCAGTTCAGCCCATGGACCTGCAGAAATATGTTTTTCTGCCAGCCTGATTTCATGGAGGTTATTTGTTCACTTGGCTCGTCCAGTTTTGTGGGACAGTTCCCGTGGTGCCACTCCTTTCCCTGGTCACCTGTTTGTTTATCAGTGTACAGAGTGCAGGGTTTTCAAAAGACCTGCAAGAGTGAAGTGCCTCTATCTCATGGAATACTTCAGACTCTTTTGAAGCCCTCTTGGGAAGAGATAATTTTCATTGCTCGATAATTCACAACCTTTCATTTTTGCATCATGACATCTTTCCCCAAGTCTGTTTGGTGAAATTATCTGTTCTTCCAG
Seq C2 exon
GTTCTAGATCTGCATGACAACCAGCTGGCATCGCTTCCTGCTGATATTGGTCAGCTGACATCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819:ENSGALT00000014334:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PU(6.8=11.5)
A:
NA
C2:
PF127992=LRR_4=FE(50.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]