GgaEX0012878 @ galGal4
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr17:1549021-1550182:-
Coord C1 exon
chr17:1550138-1550182
Coord A exon
chr17:1549619-1549696
Coord C2 exon
chr17:1549021-1549089
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATGGGTTTTTCCCTCCTCAGGTG
3' ss Score
10.09
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTTCCATACGGGGCCTTTGCAACTTGTAAGGTCTTGCAGAAAAAG
Seq A exon
GTGCTGATTATTCATACAAATAATCTTACATCTTTAGTTCCAAAGTCCTGTAGCCTCCTGAGTCTCATAACTGTGAAG
Seq C2 exon
GTTCTAGATCTGCATGACAACCAGCTGGCATCGCTTCCTGCTGATATTGGTCAGCTGACATCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127992=LRR_4=PU(6.8=11.5)
C2:
PF127992=LRR_4=FE(50.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATACGGGGCCTTTGCAA
R:
CTGAAGAGATGTCAGCTGACCA
Band lengths:
113-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]