MmuEX0027180 @ mm10
Exon Skipping
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32955181-32959613:-
Coord C1 exon
chr2:32959517-32959613
Coord A exon
chr2:32956475-32956552
Coord C2 exon
chr2:32955181-32955249
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCCCTTTCCTCCTAGGTG
3' ss Score
12.68
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCCAGAAGAGCTCACACCGGAGGATGCCCCTCTTCTTTCGGAAGCGGAAACCCAGTGAGGAGGCTCGAAAACGCCTGGAGTACCAGATGTGTCTG
Seq A exon
GTGTTGATTGTCCATACAAACCACCTCACCTCCCTGCTTCCCAAGTCCTGCAGCCTCTTGAGCCTTGTCACCATCAAG
Seq C2 exon
GTTCTGGATCTCCATGAGAACCAGCTGACAGCCCTTCCTGATGACATGGGGCAGCTGACAGTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792_MULTIEX1-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
PF138551=LRR_8=PD(46.2=92.3),PF127992=LRR_4=PU(6.5=11.5)
C2:
PF127992=LRR_4=FE(48.9=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGAGCTCACACCGGAG
R:
CTGCAGGACTGTCAGCTGC
Band lengths:
163-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types