GgaEX0012878 @ galGal3
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1946011-1947172:-
Coord C1 exon
chr17:1947128-1947172
Coord A exon
chr17:1946609-1946686
Coord C2 exon
chr17:1946011-1946079
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATGGGTTTTTCCCTCCTCAGGTG
3' ss Score
10.09
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTTCCATACGGGGCCTTTGCAACTTGTAAGGTCTTGCAGAAAAAG
Seq A exon
GTGCTGATTATTCATACAAATAATCTTACATCTTTAGTTCCAAAGTCCTGTAGCCTCCTGAGTCTCATAACTGTGAAG
Seq C2 exon
GTTCTAGATCTGCATGACAACCAGCTGGCATCGCTTCCTGCTGATATTGGTCAGCTGACATCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127992=LRR_4=PU(6.8=11.5)
C2:
PF127992=LRR_4=FE(50.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATACGGGGCCTTTGCAA
R:
CTGAAGAGATGTCAGCTGACCA
Band lengths:
113-191
Functional annotations
There are 0 annotated functions for this event