DreEX6011783 @ danRer10
Exon Skipping
Gene
ENSDARG00000060683 | lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060526-97]
Coordinates
chr5:32281312-32281675:-
Coord C1 exon
chr5:32281631-32281675
Coord A exon
chr5:32281471-32281548
Coord C2 exon
chr5:32281312-32281380
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTCTTTAACTGTAGGTG
3' ss Score
9.13
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTCCCTCCTGTGCCTTCTCTATGTGTAAAGTGCTTCAGAAGAAA
Seq A exon
GTGTTAATTCTTCATACAAATGACCTGAGGTCACTCGTACCTAAAGGCTGCTGTCTTGGTGCCTTAGCAACATTAAAG
Seq C2 exon
GTCTTGGATCTACATGAAAATAAGCTCACATCACTTCCAGATGAGATCGGACAGCTTTCGTCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060683-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127992=LRR_4=PU(7.3=11.5)
C2:
PF127992=LRR_4=FE(53.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCTCCTGTGCCTTCTCT
R:
CAAGGACGAAAGCTGTCCGAT
Band lengths:
111-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]