BtaEX6046241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98199420-98201886:+
Coord C1 exon
chr11:98199420-98199464
Coord A exon
chr11:98200673-98200750
Coord C2 exon
chr11:98201818-98201886
Length
78 bp
Sequences
Splice sites
3' ss Seq
CGAAACTCTTTCCCACGCAGGTG
3' ss Score
8.59
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
ATTCCATTTGGGGCTTTTGCAACATGTAAAGTTCTGCAGAAGAAG
Seq A exon
GTGTTGATCGTCCACACAAATGTGCTCACCTCCCTGCTCCCTAAATCCTGCAGCCTCCTGAGTCTCGCCACCATCAAG
Seq C2 exon
GTTCTGGATCTTCATGATAACCAGCTGACAGCCCTTCCCGATGACATAGGGCAGCTGACGGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127992=LRR_4=PU(6.5=11.5)
C2:
PF127992=LRR_4=FE(47.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCATTTGGGGCTTTTGC
R:
GTCAGCTGCCCTATGTCATCG
Band lengths:
104-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]