HsaINT0097548 @ hg38
Intron Retention
Gene
ENSG00000119681 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr14:74509238-74509859:-
Coord C1 exon
chr14:74509734-74509859
Coord A exon
chr14:74509364-74509733
Coord C2 exon
chr14:74509238-74509363
Length
370 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CGAGCGCTGTCTGTCTGCAGACC
3' ss Score
9.1
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGCCAGCCGGGCCTCATGCCCCACAGGCCTCTGCCTCAACACGGAGGGCTCCTTCGCCTGCTCTGCCTGTGAGAACGGGTACTGGGTGAATGAAGACGGCACTGCCTGTGAAG
Seq A exon
GTAACCCTGGGGAGGCAGTGGTGGAAGGGGACAGAATATAGGCTGTCTTACCTCCCAAAGAACACTCAATTTGTCCCCAGTTTGGGGCTGATGCCGAGGGGCTCCAGGCTAGGCTAGAAGACCCCATAAATGGACCTGGCCCCAACAAGAGCTTCTATTGTCATAATCCCCAAGTTCAGAGTGAGGACAGGAGGAAAAGCCAGTCCCAGAGAAGAGGGAAGCTGAGGGCAGGGCTGTCCTGGGAGCGTTCTAGGGAGGGGGTTTTAGGAAAGCCCCAGGGGCTCAGAGAGGGAAGCCACGGTGAGGTTCCTGCATTGCCTGGGGAGTGGGAGCCCTCCTAGGTCCCCGGGCGAGCGCTGTCTGTCTGCAG
Seq C2 exon
ACCTAGATGAGTGTGCCTTCCCGGGAGTCTGCCCCTCCGGAGTCTGCACCAACACGGCTGGCTCCTTCTCCTGCAAGGACTGCGATGGGGGCTACCGGCCCAGCCCCCTGGGTGACTCCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119681:ENST00000261978:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAGTGTGCCAGC
R:
CTTCACAGGAGTCACCCAGGG
Band lengths:
252-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development