RnoINT0087542 @ rn6
Intron Retention
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108513784-108514606:-
Coord C1 exon
chr6:108514481-108514606
Coord A exon
chr6:108513910-108514480
Coord C2 exon
chr6:108513784-108513909
Length
571 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TGGTTTGTCTATCTGCCTAGACC
3' ss Score
6.96
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGCCAGCCGAGCCTCATGCCCCACCGGCCTCTGCCTCAACACGGAGGGCTCCTTCACCTGCTCAGCCTGTCAGAGTGGGTACTGGGTGAACGAAGATGGCACTGCCTGTGAAG
Seq A exon
GTAACACAGGAGAGATGGTGACAGAATACAGGCTGCCCTCCCTCTTAAATAGCATGTTTGCCCTCCAGCCTTGGGCTGATGCTGGGAGTCTCTGGGTTAGGTTAGAGGAAACTTTGGGAGACTTGACCCCAGAGAGCTTCTGAACTTGACATAACTTCTAAGTTGAGAGATGAGACAAATTGTCACAGAGACAAGAGGAAAGCTCAAGTCACATCCGGTAGTGCATGACTATGGCCCCAGGACTTGGGGGTGGAAGCAGAAATATCAGGAGTTCAAGGCCAGCCTTAGCCTTGTTGAGTTTGAAGCCAGCCTGAACTACAGGATGAGTTTGAGGCCAGCCTAGCTACAGGACATTGTCTCAAAAGAGCTAAGCTGTAGGTATGGCTATCCAAGGAGCTTTCTAGGAAGGAAGTGTGAGGTTGCCTTAAAGAATACGGCCAAGACTTGCCCTTCTCTAGAGATCCAGAGTATTCTCCAAACTCAAAGGATGGGCGAGAGGTGTAGTGAAGGAAGGCTTCATTGCTGGGACTGCCCTTCTGGCTCCATGACCATGGTTTGTCTATCTGCCTAG
Seq C2 exon
ACCTGGATGAATGTGCCTTCCCCGGAGTCTGCCCCACAGGCGTCTGCACCAACACTGTGGGCTCCTTCTCCTGCAAGGACTGCGACAGGGGCTTCCGGCCCAGCCCCCTGGGCAACAGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094:ENSRNOT00000031331:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGTGTGCCAG
R:
CTTCACAGCTGTTGCCCAGG
Band lengths:
252-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]