MmuINT0093698 @ mm9
Intron Retention
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:86133907-86134694:-
Coord C1 exon
chr12:86134569-86134694
Coord A exon
chr12:86134033-86134568
Coord C2 exon
chr12:86133907-86134032
Length
536 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
ACAGTTGTCTCTCTGCCTAGACT
3' ss Score
7.44
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGCCAGCCGAGCCTCGTGCCCCACCGGCCTCTGCCTCAACACGGAGGGCTCCTTCACCTGCTCAGCCTGTCAGAGCGGGTACTGGGTGAACGAAGATGGCACTGCCTGTGAAG
Seq A exon
GTAACAGGAGAGATGGTTACAGAGGGACATTATATAGGCCTCCCTCCCTCTTAAATAGCATCTGTTTGTCTCCAGCCTTGGGCTGATCCTGAGTCTCTGGGTTAGGTTAGAGGGAACTTGGGGAGACTTGGCCTCAGAGAGCTTCTGAACTTGACATAACTTCTAAGTTCAAAGATGAGACAAATGGTCACAGAGACAAAAGGGAAGCTAAAGTCACCTACCGTGATTTCGTGTGATGACCATGATCCCAGGACTTGGGGTTGGGAGCAGAGGGATCTGGAGTTCAAGGCCAGCCTTAACTACAGAATGAGTTCAAGGCCAGCCTGAGCTATATAACACTGTCTCTCAAAAGAGGTAAGCTGGAGGTATGGCTACGCAAGGAGCTTTCTAGGAAGGAAGTACAAGGTCGCCTTATAGAATATGGCCAAGGCTTGCCCTTCTCTGGAGATCCAGATGGGCGAGAGGTGTAGTGAGGGATGGCTTCATTGCTGGGACTGCCCTCCTGGGTCCATGGCCACAGTTGTCTCTCTGCCTAG
Seq C2 exon
ACTTGGATGAATGTGCCTTCCCTGGAGTCTGCCCCACAGGCGTCTGCACCAATACTGTAGGCTCCTTCTCCTGCAAGGACTGTGACAGGGGCTACCGGCCCAACCCCCTGGGCAACAGATGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-Ltbp2:NM_013589:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=PD(21.7=23.3),PF0764510=EGF_CA=WD(100=95.3)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGTGTGCCAG
R:
ATCTGTTGCCCAGGGGGTT
Band lengths:
246-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: