HsaINT0098614 @ hg38
Intron Retention
Gene
ENSG00000177943 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr9:136855254-136855619:+
Coord C1 exon
chr9:136855254-136855338
Coord A exon
chr9:136855339-136855430
Coord C2 exon
chr9:136855431-136855619
Length
92 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CACCAGTTCTGCCCCCACAGAGG
3' ss Score
6.04
Exon sequences
Seq C1 exon
ATCCTCCTGGCCGGGCAGACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCTCATCCTGTCTGACCACTGCAGACCAGTCTCGG
Seq A exon
GTGAGCCTGCTGACTCTGCCCTACCCTGCCTTGCCCTGGAGAGGCACAGCACTCCCCATCCCTGCCTCCTGACACCAGTTCTGCCCCCACAG
Seq C2 exon
AGGTGTCCACCCTGCAGCCGCTGCCTCCTGGGCCCCGGGCCCCAGCCCCCCAGCCCCTGCCGCCCAGCTCGCGGCTCCAGGATTCCTGCAAGCAGGGGCATCTTGCCTGCGGGGACCTGTGTGTGCCCCCGGAACAACTGTGTGACTTCGAGGAGCAGTGCGCAGGGGGCGAGGACGAGCAGGCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177943:ENST00000485732:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.492
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(16.1=86.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCTGTCTGACCACTGCA
R:
AAGTCACACAGTTGTTCCGGG
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development