HsaINT0102271 @ hg19
Intron Retention
Gene
ENSG00000166482 | MFAP4
Description
microfibrillar-associated protein 4 [Source:HGNC Symbol;Acc:7035]
Coordinates
chr17:19289623-19290151:-
Coord C1 exon
chr17:19290073-19290151
Coord A exon
chr17:19289778-19290072
Coord C2 exon
chr17:19289623-19289777
Length
295 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
CCCCATGTCCCTACCCCCAGCTC
3' ss Score
8.36
Exon sequences
Seq C1 exon
GCACTCCTGGCCCTGCCGCTGCTGCTGCTTCTCTCCACGCCCCCGTGTGCCCCCCAGGTCTCCGGGATCCGAGGAGATG
Seq A exon
GTAAGCAGCCCCACACTCACAGACGCGGCCTGGCCCACAGGTTGTGCAAGAAGAGGCTGGACTGTCAGAACAGACTGTCAGGGCCGAGCCCCAGCTCTGCAGGACTCAGGTTCCTCCTTTACAAAATGGGGCAGATGGATGACATAAGCATTGCTCATCTCCCTTGAAGAAATCTTCCATGACTCCTTGTGTCAAAGTCCCCCAGCCCCAGGGACTGAGGCAAACCTTGGGGTGCTGAGGTGTCAGTGATGCCATAGTCCCACTCTCCTCACTGTCCCCATGTCCCTACCCCCAG
Seq C2 exon
CTCTGGAGAGGTTTTGCCTTCAGCAACCCCTGGACTGTGACGACATCTATGCCCAGGGCTACCAGTCAGACGGCGTGTACCTCATCTACCCCTCGGGCCCCAGTGTGCCTGTGCCCGTCTTCTGTGACATGACCACCGAGGGCGGGAAGTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166482-MFAP4:NM_001198695:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(19.6=82.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGCTTCTCTCCAC
R:
GTCCACTTCCCGCCCTCG
Band lengths:
215-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)