MmuINT0098112 @ mm9
Intron Retention
Gene
ENSMUSG00000042436 | Mfap4
Description
microfibrillar-associated protein 4 [Source:MGI Symbol;Acc:MGI:1342276]
Coordinates
chr11:61299223-61299694:+
Coord C1 exon
chr11:61299223-61299307
Coord A exon
chr11:61299308-61299539
Coord C2 exon
chr11:61299540-61299694
Length
232 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
CCCCACACTGCCACTCGCAGCTC
3' ss Score
4.71
Exon sequences
Seq C1 exon
GCCCTCCCAGCCCTGCCACTGATGCTGATGCTGCTCTCCATGCCTCCCCCCTGCGCCCCGCAAGCCTCTGGGATCCGGGGAGATG
Seq A exon
GTAAGCAGCCCCCATTCACAGACACGGCCTGGTCAGCAGGCTGGATGAGGCCATTCTAAGTGAGGCTCTGCAGGACTGCTTCCTCCTCTACAAAGTGGCAGGTATCCCCCTAGAGAAATCTCCAGATTTCTCCTGATAGAGTCCCTTAGGCCTGGAGCAAAACTGGGATATGGAGGGGGGTGTCCTTATGCCTTAGTCTTTCTCCTCACGGTCCCCACACTGCCACTCGCAG
Seq C2 exon
CTCTGGAGAAGTCCTGTCTTCAGCAACCCCTGGACTGTGATGATATCTACGCCCAGGGCTATCAGGAAGACGGCGTGTATCTCATCTACCCCTATGGCCCCAGTGTGCCGGTGCCCGTCTTCTGCGACATGACAACTGAGGGCGGCAAGTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042436-Mfap4:NM_029568:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(54.4=82.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGCCCTGCCACTG
R:
GTCCACTTGCCGCCCTCA
Band lengths:
236-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: