GgaINT0124053 @ galGal3
Intron Retention
Gene
ENSGALG00000003866 | FIBCD1
Description
NA
Coordinates
chr17:6664427-6665397:-
Coord C1 exon
chr17:6665238-6665397
Coord A exon
chr17:6664564-6665237
Coord C2 exon
chr17:6664427-6664563
Length
674 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
ATCCCTGTGTCATGCTGCAGGCT
3' ss Score
7.43
Exon sequences
Seq C1 exon
CTCCTCTCAGAGAGCCAAACCAACATGGCCCGGCTGGTGAGCTCGGTCAGCGATGTGCTGGACACACTGCAGAAGGAGCGCGGCGGCGTCCGGCCCCGGCTCAAAGCTGACCTGCAGCGAGCCCCGGCACGGGGAGCACGGCCCCGTGGCTGCTCCAATG
Seq A exon
GTGAGAGATGAACCCCCAGCCCTGGGGAGGGGTGCGCCATGGGGAGGGGTGCGCCATGGGGCATCTCCCAGCTCTCTACCTGCCAAGAGGGGAGGAAGAAGGCAGTTGTGATGGGGAAAGCAGCCTGGAGTGACAGTGGATACGGTAGAGGGAGAAGAGGCAGGAGGGAGATGTGCCACAAAGGCGGTCTCTCACCATGCAGCCCCCAGCCCTCCATAAAACAGCCCATGCAGCCACCACAAAATCCACTTTACTTCTGCCTGCTTCCCGCATCCACGAAGGAGAAGCAAAGCCAGAAGTGACCCTTCTCCTCTATTTGGGTGCAAACGCTACGGGCACACTGAGCAGCCCTGGGAGCAGTCACATTCATCATTGCTGCACTGAGATGGGGCTGAGTAAGCTGCCCTGGAGCCATCAGCACTGTGCCCATGGCCACCTCCAGCCATCAGCCCCCTGCTCCCTGCTGGGGTCCATCCTGCCCCAACCACCCTATGGGGACATGGGGGCGGTCCCTGCATCCCTCCCAGCACCACTCAACCCAATCCCTGGAGGGAAAGGGAGGGAAAGAGCAAAGCAGTGAGGTTGGGAGCCTGAAGAAATGGCAAGCCTTGAAATTAGATCATTAATTAACCAGTCTTCCCCTCTTCCCACCCCATCCCTGTGTCATGCTGCAG
Seq C2 exon
GCTCCCGGCCCCGGGACTGCTTTGACATCTATGCGAGCGGACAGCAAGAGGATGGGATTTACTCCATCTTCCCCACACATTACCCCTCAGGCTTCCAGGTCTACTGTGACATGACGACCGATGGGGGCGGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003866:ENSGALT00000006154:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF029949=Transposase_22=PD(37.4=74.1),PF104734=CENP-F_leu_zip=PD(36.4=66.7)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(19.7=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCAGAGAGCCAAACCA
R:
CCCCCATCGGTCGTCATGTC
Band lengths:
286-960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]