HsaINT0064192 @ hg19
Intron Retention
Gene
ENSG00000130720 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:25922]
Coordinates
chr9:133799131-133799783:-
Coord C1 exon
chr9:133799624-133799783
Coord A exon
chr9:133799268-133799623
Coord C2 exon
chr9:133799131-133799267
Length
356 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GACAGCCTTGCCTCCCTCAGGCT
3' ss Score
6.68
Exon sequences
Seq C1 exon
CTTCTCTCTGAGAGCCAGGGCCACATGGCTCACCTGGTGAACTCCGTCAGCGACATCCTGGATGCCCTGCAGAGGGACCGGGGGCTGGGCCGGCCCCGCAACAAGGCCGACCTTCAGAGAGCGCCTGCCCGGGGAACCCGGCCCCGGGGCTGTGCCACTG
Seq A exon
GTGAGTGGGGCAGGGCCTGCCTTCCTCCGGTGCCTCGGGTCCCAGCTCTGGGGAGCGGGGAAGTTGGGGTGAGGGTTCCCCAGCCATGAGACTCCAGGGCCCGACCCTACTTCCATGTGGCCTGCGCTGAAGCCCTCTCGGTCCATTCTCCAGATGAGGAGAGTAAGTCCCAGAGAGGGTGATTCTCTCACCCAGCCACAGCAGGGAGTGGCAGAGCCAAGGTCGGACTCCAAGGCCAGTGCTCTCTCAACCCCATGGGACCCCACATGCATTATCGATGGACAGACAGTTTGGCCAGGGGGCTGGGCAGGAACGTGCTGGGGCCGCAGCCACCCTGACAGCCTTGCCTCCCTCAG
Seq C2 exon
GCTCCCGGCCCCGAGACTGTCTGGACGTCCTCCTAAGCGGACAGCAGGACGATGGCGTCTACTCTGTCTTTCCCACCCACTACCCGGCCGGCTTCCAGGTGTACTGTGACATGCGCACGGACGGCGGCGGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130720-FIBCD1:NM_032843:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF119323=DUF3450=PD(30.0=66.7),PF104734=CENP-F_leu_zip=PD(32.5=50.0)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(50.0=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCTCTGAGAGCCAGGGC
R:
GTGCGCATGTCACAGTACACC
Band lengths:
278-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)