BtaINT0062546 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017982 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr11:101185089-101185796:-
Coord C1 exon
chr11:101185637-101185796
Coord A exon
chr11:101185226-101185636
Coord C2 exon
chr11:101185089-101185225
Length
411 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GACGGCCTTCCCTGTCTCAGGCT
3' ss Score
7.92
Exon sequences
Seq C1 exon
CTTCTCTCTGAGAGCCAAGGCCACATGGCTCACCTGGTGAACTCGGTCAGCGATGTCCTGGACGCCCTGCAGAGGGACCGGGGGCTGGCCCGACCCCACGTCAAGGCTGACCTTCAGAGGGCACCTGCCAGGGGATCACGGCCCCGCGGCTGCGCCAACG
Seq A exon
GTGAGTGAGGTGGGGACTGCCTTCCTTGCATGACCTGGGTGCCCAGGTTCATTCCCACAACGTCCCCCACCTGCCCCACTGACAAGGCTACACTGCTTCTGTGTGCTGAGGACTTCCTGCTGCCGGGCAGCCCCGAGCACCCTACCTATACCCTCCTGTTGACCCCTCTCCCTGCCCGATGAGGTGGAGCTCACTGCACCCATTTTCCAGATGAGGAAATTGAGGCTCAGAGAGGGTGCTCACTCACCACATCCACCAAGGGAGAGGCAGAGCCACAGTCTGCCCCCAAGGCCAGTGCTCTGGAGCCCACCTGACACTGCTGGACAGACAAGTCAGAGACCCAGGGACACAGGAGACAGGGGAGGAACGTGGGTGCGGGGCCCAGTGCCCTGACGGCCTTCCCTGTCTCAG
Seq C2 exon
GCTCTCGGCCACGTGACTGTCTGGACGTCCTCCTGAGCGGACAGCAGGAGGACGGCGTTTACTCCGTCTTCCCCACACACGACCCCGCCGGCTTCCAGGTCTACTGCGACATGCGCACAGATGGAGGCGGCTGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017982:ENSBTAT00000023924:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=PD(25.2=48.1)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(19.8=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTCTGAGAGCCAAGGCC
R:
TCCAGCCGCCTCCATCTG
Band lengths:
294-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development