DreINT0141596 @ danRer10
Intron Retention
Gene
ENSDARG00000093851 | si:ch73-332k15.1
Description
si:ch73-332k15.1 [Source:ZFIN;Acc:ZDB-GENE-091118-121]
Coordinates
chr8:12533305-12536878:-
Coord C1 exon
chr8:12536713-12536878
Coord A exon
chr8:12533442-12536712
Coord C2 exon
chr8:12533305-12533441
Length
3271 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
3' ss Seq
TGGCATGCATCTTCTGGCAGGTT
3' ss Score
7.39
Exon sequences
Seq C1 exon
CTACTGTCAGAAAGCCAGATCAACATGGTGAAAGTGGTGAACTCGGTGAGTGACGCGCTCAGCTCCATGCAGAAGGAAAATGGAAACATCAAGAGCCGTCTTAAGGCAGATCTGCAGAGGGCTCCGGTGCGCAGTGTCCGGCCCAAAGGCTGCGCCGCTGGAGAGG
Seq A exon
GTAAAAAAAACTCCTCATTAGCCACATATTCTCAACTCTCCAGCAGGCCCTAATGAGCCCTGGAAATGGCTTCACACCTATATTTCCTCGTAAGATTCCCTAGCAGTGTGAAAGAGACATGCCACTGCTTAGACAGCAGGAGCGACACGACAGATTTAAAGTCTAAAAGCTTTCTTTTCTTATATTGAACATTGAAAGGGTCTCAAAACATACAAAGACCAATGCAGTTATGGCTTGGAGCTTAATACAGGGTGTAAAGTTAAGTGAAAGTACAAATGCTGAGCAAAAAGTTTATTCAGTTAAATAATTTAAGTATCTGGCCAAAATTTAAGTTAATGTTTTGAGTAAAATTAAATATGTACTTTATAGTAATCAACAGTGTTGGTTAAATTACGTTGAAAAGAAAAAGTAATAGATTATAAATTACTGACTACTAATGGAAAAATTGTAATCTGATTACATTTCTAATTAATTCATGTAACAAGTAATCAGATTACTAATTACTTTAGTTAAAAGTTACTTTTAAAACATATAAAATCTATAAAAGTACAACATAAACTGCAGCTCTTTCAGTAATTTAATATTCACTCTAAAATATTACAATGGGTTGATCACAGCAGCTTGACATATTCAAAAGACTTAAAGAGTTCGCCCAAAACCTAAAATTCTTTTATCATTCTCTTGTTCCAAACCCGTTTGTCTTTTTTTTTAACACAAAAGAAGACATTTAGAAAAAACATCCATTGACATCCATAGTATGCAAAAGCAGTGCAGTGTTTGGGTGTTCTGTGTTTGTCTAAGGAAATCCGTCCACCAAAATGTATATATTCCATACAAAGCATGAAGCTGATCAGTCAGTTCTTGCTATGTGACTTTTTCAATTGGGTGTGCCTGGGAAATGTGAGCATGCAACATGCTCTCCTAATGTGCACACTCGCAAAAGACACAATATGTGAAAGCAGCTACACTTCTCTTCACATTCAGAAGATACCTTTACTCCTGATCCTGCACAAAAATCCAATTTAGCCTGTTTAGGCTGAGTTGGGCCGCTGTGTTTCTGAGTGACGGTGTTCTCCTTGGTAACGAGTAATGACGTAGAATGTTTTCTGTTCAAGTGCTTGAACAAGTTGTTGATCGAGTTAAAAGCAGTTGACAGTTCGTTAAAGACTGGACATGGACTTTTACAGCAGTGTTTTTGTTTTTACGCTCAATGAAATCAAAGTAATGTCTGTTTTTGCACTTGAAAAAGCAACCACTCTCGACAGCTCAGTCACTCCTTGTATTCAAACCATTTGTTAAGGGATTTATAAAGCATAAATAGTCCTCACTTTAGATTAGGTCACAAAACTGGATGTAGTTGAGTTAATAAAGCATTTTATGTAATGTAATGTAATGTGTCGTTATGTAGCGCATTTATTGTGTATGGCCATACACCCAAAGAGCTTTATAATCATGAGGGGGGGTCTCTCCACACCACCACCAGTGTGCAGCATCCACTTGGATGATGCAAGGACAGCCACAGGACAATGGCGCCAGTGTGCTCGCCACACACCAGCTATTGGTGGAGTGGAGAGACAGTAATACAGCCAATTCGATGGATTGGGATGATTGGGAGGCCATGATCTTAAGGGCCGATTGAGAGACTTTGGCCCCCTACTCTCCCCTACTCTTTACGAGAAGTGCCATGGGATTTTTACGACCACAGAGAGTTAGGACCTTGGTTTTAACGTCTTATCCGAAAGACGGCACCCACTGACAGTATAGTGTCCCCTTCACTTTTACTGGGGCATTAGGACTCACACAGACCACAAGTTGAGCGGGGGCTGACCTTTCTAGCTCAACTTCCAACAGCAAGTTAGTTTTTCCCATGTGGTCTCCCATCAAGGTATGACCAGGCTCAGCCCTGCTTAGCTTCAGTCTTGGGCTGCAGGGTGATATGGCTGTGGCGTATGTTTATTAACATACAAATTAATTATTAGTATATGCCTAAATAATAAGAATTCCTTCCTTTTCTTTTCGGCTTAGTCCCTTTATTAATCCGGGGTCGCCATAGCGGGATGAACCGCCAACTTATACAGCCCATGTTTAACGCAGCGGATTCCCTTCCAGCTGCAACCCATCTCTGGGAAACATCCATACACACCCATTCACACCCATACACTATGGACAATTTAGCCTACCCAATTCATCTGTACCGCATATCTTTGGATTGTGGGGCAAACCGAAGCATTCGGAGGAAACCCAAGCGAACGCAGTGAGAACATGCAAACTCCACACAGAAACGCCAACTTACTCAGCCGAGGCTCGAACCAGCGACCTTCTTGCTGTGAGGCGACAGCACAACCTACTGCACCACTAATAATAAGAATTATAAATGTTAATTTGAATATGTCATTAATCATTTACTCTCTTATTCTAAATGATCTTTAAAAACAACCAACTATGCTTAAATAACTGGTTTGTAAATAATGCAATACTTAATTTAGTAATGAAAAATAAAGCATTACCAAATTACGAAAGTACAATTATTAAGTACATTATAAATGTGCTTATAAGTCAGTAATACAGCATTTGTATCTTCAGTTATAAACTGTTTACTAACGTTTATTAATGTAGAGTTAATGCTTAACAGATACTGAATTCACTATTTGCTAATGTTTAATAAATGATTTATAGTGTGTAGTTATTATAAAAGTTTTAGTATCTTTTTGCAAGAGTATATTTAGAGTACATCATGCTCTGTATATGCATGTGTGTGTGTGTGCGAGAGCAGGCATTGATGAGCTCCGGAGCATCAGAGACGATCTCATTAATATTCATGACCATTCCAAATATAGTCAAACCGTGATTTTTATTCTAGAGCAGGGGTGCCTAAACTTGGTCCTGGAGGACTGGTGTCCAACTTGTTTTAAAACACTTGCTATGAGTATACCTTGTAGGAGCTTGATTGGCATGTTCAAGTGTGTTTGATCTAAATTCTCTAGGACACCGGCCCTCCGGGACCGGGTTTGGGCAACTCTACTCTAGAGCTTATTCTTCTTGTTATAAATTAGTATATGCAACCATTTCTGCAGATTTTTTTACTCTCTTAGGCCAGTCTTGAATCAATGCACTATATGGCACCTTTAAAAATACATACAATGCAGTAATCAAGTACAATTACTCAAGCACTTAAAATACTTACAATGCCGTAATCATGTACAATTACTTAAGTATTTTAAAGCACTGTTCTTAATGTGCATTGATGATGCTGGCATGCATCTTCTGGCAG
Seq C2 exon
GTTCCAGACCCAGAGACTGCAGTGACATCTATGCCAGCGGGCAAAGAGAGGATGGCATCTACTCGGTGTTCCCCACGCATTACCCAGCAGGCTTCCAGGTCTTCTGTGACATGACTACTGATGGAGGCGGGTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093851:ENSDART00000114118:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]