HsaINT0064192 @ hg38
Intron Retention
Gene
ENSG00000130720 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr9:130923744-130924396:-
Coord C1 exon
chr9:130924237-130924396
Coord A exon
chr9:130923881-130924236
Coord C2 exon
chr9:130923744-130923880
Length
356 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GACAGCCTTGCCTCCCTCAGGCT
3' ss Score
6.68
Exon sequences
Seq C1 exon
CTTCTCTCTGAGAGCCAGGGCCACATGGCTCACCTGGTGAACTCCGTCAGCGACATCCTGGATGCCCTGCAGAGGGACCGGGGGCTGGGCCGGCCCCGCAACAAGGCCGACCTTCAGAGAGCGCCTGCCCGGGGAACCCGGCCCCGGGGCTGTGCCACTG
Seq A exon
GTGAGTGGGGCAGGGCCTGCCTTCCTCCGGTGCCTCGGGTCCCAGCTCTGGGGAGCGGGGAAGTTGGGGTGAGGGTTCCCCAGCCATGAGACTCCAGGGCCCGACCCTACTTCCATGTGGCCTGCGCTGAAGCCCTCTCGGTCCATTCTCCAGATGAGGAGAGTAAGTCCCAGAGAGGGTGATTCTCTCACCCAGCCACAGCAGGGAGTGGCAGAGCCAAGGTCGGACTCCAAGGCCAGTGCTCTCTCAACCCCATGGGACCCCACATGCATTATCGATGGACAGACAGTTTGGCCAGGGGGCTGGGCAGGAACGTGCTGGGGCCGCAGCCACCCTGACAGCCTTGCCTCCCTCAG
Seq C2 exon
GCTCCCGGCCCCGAGACTGTCTGGACGTCCTCCTAAGCGGACAGCAGGACGATGGCGTCTACTCTGTCTTTCCCACCCACTACCCGGCCGGCTTCCAGGTGTACTGTGACATGCGCACGGACGGCGGCGGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130720:ENST00000372338:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.004
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(19.7=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCTCTGAGAGCCAGGGC
R:
GTGCGCATGTCACAGTACACC
Band lengths:
278-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development