HsaINT0103660 @ hg19
Intron Retention
Gene
ENSG00000078403 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:16063]
Coordinates
chr10:22024068-22029165:+
Coord C1 exon
chr10:22024068-22024164
Coord A exon
chr10:22024165-22028958
Coord C2 exon
chr10:22028959-22029165
Length
4794 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TCACATGTTTTTTGCCTAAGGAA
3' ss Score
6.03
Exon sequences
Seq C1 exon
TGCCTCAGGACTAGGATTACTTTCTGACCAGCAACGACAAATACTTATTCATCAACAGCAGTTTCAGCAGTTGTTAAATTCTCAACAGCTCACACCA
Seq A exon
GTAAGTTCTTTCTTTTGATAATATCTTATTAGGAGCATGTGTTCTAAGCTGTAATATTCACTGTGGGTACAGATTTCTCCTTTGTGAAATAACATTATTGAATGCATAATCAAAAAAGTTTTTCTTGCCATGTGGTACAGGCTGTGATACCTGCAGTGATGTCACATTCATTCCTGAACTTAAAAGTGACAGGGCACGTGGCATGGTGCTGCCATAGGCTCTGGTAACACAGTGCTGAGATGTGGTGCGTGTTTTCCCGGAGCTTCATTTTGATACGGGAGATGGATGGACACGATGCACGCTTTTTGGTTGTGATAAATACTGAGAAGAACAAAGAAGTGGAATAAGTGGGGAAGAGCATAGGGAACCGAGGACCATTTTAGATAGGATGGCCCCGCCTCTGCAAGGGGGGTGACTTTTGAGCACAGACCGATGTGAGAGTTCAGGGAGTGTGCCTTTGTGACTTGAGGGAACGCAGAGAGAAAGCACGTTGGAGGTAAAGGGGCAGCTGCTGTCAAAGGTCTGGACGTACTTGTGTTCGGAAGAGAAGTCAGCAGCCATGTGGTCAGAGGGTGGGAGAGGTCAGAGCCAAGGGGGTGGTCTTAGATGATCGCATACAGCCTTTCTTGGCTGTGGCAAGAAATTTGGATTTTATCTTAAGTATGAATGGAAAGCCACTGGCGAGTTTTTAAAAATCTATTACGGAGGATTTCAAGTGTACCAAAAGTAGAGTGGAGAGCACCCTGAAGACCTATGTACGCCTCATTCCATTCTCTCACCCAGTGCTAATAATCTTAGTTTTGTTTATCTCATTTCATTCTCCATTTTTTTCAGGATTAAGAATTGGAAGGTTTTGAACAGAATAGTGAAATAATGATTTACATTTTAAAGGATTAGTTTTGCTGCTATATGGAGAATAGTCTGTGTGTGTTATAGGGTGTGGGGGAGTGAAGACAGAGGCAAAAGTGGAAAAAGGGAGTGATCCAGGCAGGAGACGTAGGTGTTAAAATAGTATGGGCTACGTATTGAAAACTGCCTGGAATTGTGGTATATATATGTATATTTTTGAGAGGGAGTTTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTGGGCTCCTTGCAACCTCCATCTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTCCCACCATGCCTGGCTAATTTTGTATTTTTTGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCTGCCCTTAGCCTTCCAAAGTGCTGGAATTACAGGTGTGAGCCACTGTGCCCAGCCAAGATGTTTTGAAGACAGAACCAACAAGACTTGTTTGCTGGACATACAAGAGAAAGAAGAATTCTGAATGGTTGGTTAGTGACTTTTACTGAGATGTGGGAGAACAGAACCCAACCAATTTTGGAGAGAAAAATAGGTGTCATGGACACACTAAGCTTGAAATCTCTTTAGATGTACAAGTCAAATGGAGATAAGGCAGTTGCACAGTAGGTGTCTGGAGTCCCAGGCAGAGATGCAGTTAGTTAGAAATCTGGGGTTAGTGCTGCACAGGTGATGAGAGCCATCAGATTTGATGCGGACTCCTAGAGCATGAAGACTGAGTCCTGGACACCCTAGAAAAGGAGAATAAGCCAGTAAAGAAAGGCTATTGAGAAACTGTGGCCAGTGAGCCAAGAGAAGGACAGTGTGGCATCTTAGGGGCAAGGTGAAGGAAATGTTTCCAGAAAGGGAGGAGTCAACTGTGTAAAATGCTTCTGTGGTAGGGTAAGAAAGAATTGACCAACCGGGCGTGCTGGTGCATGCCTGTGGTTCCAGTTAATTGGGAGGCTGAGGTGGGAGGATCACTGGAGCCCAGGAGGTTGAGGGTGCAGTGACACCTGCACCTGACAGGGACTGTTTCTTTCTTAAAGGTTGTCTAGAGGCTTTTTACAGTTTGGGTGTGATGAAAGTAAAAACCTCATTAAATGGTTCAAAAGGAAATGGGAGGGAGAGGAAGTAAAGATAGCATATGGGCACCTCAAGACATGTCACTTTGGAAAGCAGAGGAAGGGGAAGCAGGAGGCAGATGTGGTGGGCACACGGGGCAGTTTCGACTCATTTTGAATGTGACAGCGTGTGTGTATGTTGATGGGACATTGCTGGGATAGGAGAGAAGAAAGGTGCTAGCAGAGGAGGAGATGAGAACGGTATTTCACTGCCCCAGCAAGGCAGGCAGAGCAACTGGAGGTGGGTTTTATGTGGAGGGTTGAAGCAATCCCACTTTCAGTGCTTCTGATTTTCTTAATTAGAAGTAAAGTGATCAGCAGAGGGAAGGAGATGGGTGTTAACGGTTAGATAAGAGGGGAGATGGGAAATAGAGAACTTGTAGAAGGGGAGAAAGTATGGACCGAGACCCAAGTGGGATTGTGGCTCAGGTGCAGGGCAGGCCTGGCCCTGTGGACAGTCGTGGGGCTTCCTCCAGACCCATTTCCCTAGCACTCTTCATTCAGTTGGGCTGCTTGGAGAATGCATTGCTTAATTAACATAGAAATTACAAAGGCTGACATCCTTTCTAAGTATATTTATGTACTATTTTGCTGCAGTCAAAAATATATTGAAAATACTTTTGATTCTGGATCATTTTCAGTCTGTTTTTAGAGTGGTGTTAAAGGCACACTGCATGTAAGTGTATATAAATTCTTAAATGCTGGCCGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGACGGAGGTGGGCGGATCACGAGGTCAGGAGTTCGGGACAAGCCTGACCAACGTGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCGCGTGTGTATAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGAGGTGTAGGTTGCAGTGAGCCGAGAGCACACCACCGCACTCCAGCCTGGACAACTAGAGCGAGACTCGGTCTCAAAAAAAAAAAATCTTAAATGCTGACACTAAGATGGGATCTTGTTTTTTCTTACCAGTTGCCTCATCTTAATATGAGCACTAAAACTCCATTTATTTGGGTGTCTTCCTATTAATCAAGATTTTACTCTAATAATAGCATGTGTAGCTGTCTCATTTCCAGAACATGGTTAAGGAATTTTCAGCACAAATTATTGCTTGGAGACCATGAGGACTAAAGGACTGTACTTTTTCCTTCATCTGCCAATGTCGTGGGCTAAAGTTTGTTCATTTACAGGGATCAAACTTAACGTAGGTGAGGATTTTTTGGAAGCCTCCGCACAGCTTCCGCTCGACACTCTTGCTTGACTCTGCTTCCCCCAGATGACTTGCATGTTTGCTAAATCCAGTGGTCCCTTCTCATTCTTCATCTTAACGTCACCTGGCAACGGCATTAGACAGAGTTGATCGCTTTTCCTCCTCCTTGAAACATTTCCTCCTCTTAGCTTCCAGGATACCACATCATCTTGGTGTCTTACTACCTAACTGGTCATTCCTTTTTAGCATCCTTTCCTGGGTCCTCCTCTTCAGCCTGAGAGTGCCCAAGGTGGAATTCAGTGATCTCTCATCACTGTCTGTAAATAGCATCTCTGTGCTGATACTTACATCTCCAGCCAGACCTCTCTCTGGAGCTTCAAGCTCCTGTAATGCAGCTGCTCACTCAGTAGCTCCGCTGGCATATCTTAAAAGACATTTCAAACATAACGTGTCCAGAACCGAACAGCTGATCTTCCTGCACAACCCCGCCCCACCCATCGTTTTCCTCACCTCAGCTGATGGCAGCTCCATCCTCACTCTGACACCCCACATTGACTCCATCCTGAAATCAGACTGTGCCACTTCTCAAAACCTTCCCGTTTTACCATGAATACAAGCCAAGGTGGCCATGCCTTGCCACTGCAAGCTCTGTGTTCTCCTCACTTCCTCCTGGCTCCCTCCACCCTTCCCGGGTCCTTGCTGCCACTGGATCCTGCTGGGCCTGCTCCTCTGGAGGCCTTTGGCACTGCCTGGAAATCCTCACCTGCCCCCATATCCACCCAGCGAATTCCCTCTTCTCCTCCAAATCTTCATCCAGATGTTAACTTCCCAATGAAAACTGCCCTGGGTAATCTGCTTAAAATTACAACCTGACCATTAAACCCTACTCCCTCCAGACTTTCTCATACACAGTTGTGTTTCCCTTGACGCAGAGCAGTAATCACATTCTAACGTTTTCATTTATTTCCCTTTCCCTGCTCAATGTGTTTCAAGCACCAAAAGCAGTGCCTGGCACCTAGTAAGCACTCAGGAAATCTATAAATATACGCTGCATGGAGTATATGCTTGCTGTAGAGTGGTAACTGCATCAAGAAAGCACCCTAATGACAGGCAGAAACGGGAACTTTAAGGTTGTTTTAAGTTTGGAAAGGGTTTGACCACGCATGATGCATTCAAATGTCCACCTTGATTTCTCTTAAGCTGCTGCACTTCCTGATTGATCATCACGGATAACCTAATAGAGCTCTCCTATGTGTGTCCTGTTTTGAAAATAAGCTGTTTGCTGAAGATACTGACATTTTATAGTAGATGGTTATTATCTAGTGCAGCATATTTTTCTAGATGAGATACTTGTTTTCTTTCTTTGCAAATATCTAATATTAAAGGAAAGAAAACATAAGGCAGCTCATCTGACTGCTGAATTCCGTGCTTGGGAACTCATTTTCTCTCACATGTTTTTTGCCTAAG
Seq C2 exon
GAACAACATCAAGCCTTTTTGTATCAGTTAATGCAACATCACCACCAGCAGCACCACCAACCTGAACTTCAGCAGCTGCAGATCCCTGGACCAACACAAATACCCATAAACAACCTTCTTGCAGGTACACAGGCACCCCCACTTCACACAGCTACCACCAACCCATTTCTCACCATCCATGGAGATAATGCAAGTCAGAAAGTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078403-MLLT10:NM_001195626:20
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.957
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)