GgaINT0102649 @ galGal3
Intron Retention
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17836044-17837099:-
Coord C1 exon
chr2:17836997-17837099
Coord A exon
chr2:17836257-17836996
Coord C2 exon
chr2:17836044-17836256
Length
740 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CCCCCATCTTATTCCTCAAGGAA
3' ss Score
7.18
Exon sequences
Seq C1 exon
TGCCTCAGGACTGGGATTACTTCCTGACCAACAGAGACAACTTCTACTCCATCAACAGCACCAGCAATTCCAGCAATTACTAAGTACTCAGCAACTCACATCG
Seq A exon
GTAAGTTTTCCAGTTAGTTATAACTTATTCTTCTTGTATAGCCTAAGGCATGAATAGATTCCCTACCCAAAACAAATATTAGGAATGTGTTTAACGTGGTATTACAGCTTTTGAGAATTTTCAGTTGTTTCAGCCTTTAGGATGGCAGTCACACTGGATTGCAGAATGCTGCTGGGCTCCATGTATTGCTGTCAGAATTGTTCCCTGATCCCTTCAGTCCCATTTTGCCCCTTGTGGGCCTGGTGCCCTGCATCCCTCAGTGTTAGCTGTGGGCAGTGGGGTCTGAGACCATACGTTGGTTCTAACAATGTGCAAAGTGGAAACTCTGCCACTGCTGGGACCCCAGTGTGAAACATTTTGGGAATCACCGTGAGCTGTCTTTGCTCCTCCCTTCAGTATTGACGTATGTTGTAGATAACTGGTTTTACCATTTGTGTTGCCAGTTGTGCAGTGTTAGTTCTGGTTTAATATTCTTCTCAGATATGTTTCTTTTGAGAGGGACTTGCTGAAGCCAGCAGGCTCAGCCGAACTTCTGCTCAGCTACTGATGTCAGGAAGTTTTATAGACGCTTTCTTCCCTTTCCTCCAGTCTTGTGGAACTTCGTTAGTGTAAACTAAATCAGCTGGGATTAGTTTAAGGGTTGCGCTGATGGAGGATTTGGATAAGCAAGAACCCAACAAGAAGCTATTACTCAGTAACTCACTCTTGATTCCGCCCCTCCCCCCATCTTATTCCTCAAG
Seq C2 exon
GAACAACATCAGGCCCTTCTGTATCAGCTAGTACAGCAGCACCACCACCACCAACACCACCATCAGTCTGAAGTACAGCAACTGCAGATTACTGGAGGAGCACAGATACCCATAAACAACTTACTTTCAGGCACGCAGGCATCACCACTTAATGCAGCTTCTACCAACCCTTTCCTGACAATTCATGGAGATAATGCAGCTCAGAAGGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928:ENSGALT00000012873:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.831
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCAGGACTGGGATTACT
R:
TGTCACCTTCTGAGCTGCATT
Band lengths:
316-1056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]