HsaINT1023162 @ hg38
Intron Retention
Gene
ENSG00000078403 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr10:21735139-21740236:+
Coord C1 exon
chr10:21735139-21735235
Coord A exon
chr10:21735236-21740153
Coord C2 exon
chr10:21740154-21740236
Length
4918 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CATAAACAACCTTCTTGCAGGTA
3' ss Score
8.24
Exon sequences
Seq C1 exon
TGCCTCAGGACTAGGATTACTTTCTGACCAGCAACGACAAATACTTATTCATCAACAGCAGTTTCAGCAGTTGTTAAATTCTCAACAGCTCACACCA
Seq A exon
GTAAGTTCTTTCTTTTGATAATATCTTATTAGGAGCATGTGTTCTAAGCTGTAATATTCACTGTGGGTACAGATTTCTCCTTTGTGAAATAACATTATTGAATGCATAATCAAAAAAGTTTTTCTTGCCATGTGGTACAGGCTGTGATACCTGCAGTGATGTCACATTCATTCCTGAACTTAAAAGTGACAGGGCACGTGGCATGGTGCTGCCATAGGCTCTGGTAACACAGTGCTGAGATGTGGTGCGTGTTTTCCCGGAGCTTCATTTTGATACGGGAGATGGATGGACACGATGCACGCTTTTTGGTTGTGATAAATACTGAGAAGAACAAAGAAGTGGAATAAGTGGGGAAGAGCATAGGGAACCGAGGACCATTTTAGATAGGATGGCCCCGCCTCTGCAAGGGGGGTGACTTTTGAGCACAGACCGATGTGAGAGTTCAGGGAGTGTGCCTTTGTGACTTGAGGGAACGCAGAGAGAAAGCACGTTGGAGGTAAAGGGGCAGCTGCTGTCAAAGGTCTGGACGTACTTGTGTTCGGAAGAGAAGTCAGCAGCCATGTGGTCAGAGGGTGGGAGAGGTCAGAGCCAAGGGGGTGGTCTTAGATGATCGCATACAGCCTTTCTTGGCTGTGGCAAGAAATTTGGATTTTATCTTAAGTATGAATGGAAAGCCACTGGCGAGTTTTTAAAAATCTATTACGGAGGATTTCAAGTGTACCAAAAGTAGAGTGGAGAGCACCCTGAAGACCTATGTACGCCTCATTCCATTCTCTCACCCAGTGCTAATAATCTTAGTTTTGTTTATCTCATTTCATTCTCCATTTTTTTCAGGATTAAGAATTGGAAGGTTTTGAACAGAATAGTGAAATAATGATTTACATTTTAAAGGATTAGTTTTGCTGCTATATGGAGAATAGTCTGTGTGTGTTATAGGGTGTGGGGGAGTGAAGACAGAGGCAAAAGTGGAAAAAGGGAGTGATCCAGGCAGGAGACGTAGGTGTTAAAATAGTATGGGCTACGTATTGAAAACTGCCTGGAATTGTGGTATATATATGTATATTTTTGAGAGGGAGTTTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTGGGCTCCTTGCAACCTCCATCTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTCCCACCATGCCTGGCTAATTTTGTATTTTTTGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCTGCCCTTAGCCTTCCAAAGTGCTGGAATTACAGGTGTGAGCCACTGTGCCCAGCCAAGATGTTTTGAAGACAGAACCAACAAGACTTGTTTGCTGGACATACAAGAGAAAGAAGAATTCTGAATGGTTGGTTAGTGACTTTTACTGAGATGTGGGAGAACAGAACCCAACCAATTTTGGAGAGAAAAATAGGTGTCATGGACACACTAAGCTTGAAATCTCTTTAGATGTACAAGTCAAATGGAGATAAGGCAGTTGCACAGTAGGTGTCTGGAGTCCCAGGCAGAGATGCAGTTAGTTAGAAATCTGGGGTTAGTGCTGCACAGGTGATGAGAGCCATCAGATTTGATGCGGACTCCTAGAGCATGAAGACTGAGTCCTGGACACCCTAGAAAAGGAGAATAAGCCAGTAAAGAAAGGCTATTGAGAAACTGTGGCCAGTGAGCCAAGAGAAGGACAGTGTGGCATCTTAGGGGCAAGGTGAAGGAAATGTTTCCAGAAAGGGAGGAGTCAACTGTGTAAAATGCTTCTGTGGTAGGGTAAGAAAGAATTGACCAACCGGGCGTGCTGGTGCATGCCTGTGGTTCCAGTTAATTGGGAGGCTGAGGTGGGAGGATCACTGGAGCCCAGGAGGTTGAGGGTGCAGTGACACCTGCACCTGACAGGGACTGTTTCTTTCTTAAAGGTTGTCTAGAGGCTTTTTACAGTTTGGGTGTGATGAAAGTAAAAACCTCATTAAATGGTTCAAAAGGAAATGGGAGGGAGAGGAAGTAAAGATAGCATATGGGCACCTCAAGACATGTCACTTTGGAAAGCAGAGGAAGGGGAAGCAGGAGGCAGATGTGGTGGGCACACGGGGCAGTTTCGACTCATTTTGAATGTGACAGCGTGTGTGTATGTTGATGGGACATTGCTGGGATAGGAGAGAAGAAAGGTGCTAGCAGAGGAGGAGATGAGAACGGTATTTCACTGCCCCAGCAAGGCAGGCAGAGCAACTGGAGGTGGGTTTTATGTGGAGGGTTGAAGCAATCCCACTTTCAGTGCTTCTGATTTTCTTAATTAGAAGTAAAGTGATCAGCAGAGGGAAGGAGATGGGTGTTAACGGTTAGATAAGAGGGGAGATGGGAAATAGAGAACTTGTAGAAGGGGAGAAAGTATGGACCGAGACCCAAGTGGGATTGTGGCTCAGGTGCAGGGCAGGCCTGGCCCTGTGGACAGTCGTGGGGCTTCCTCCAGACCCATTTCCCTAGCACTCTTCATTCAGTTGGGCTGCTTGGAGAATGCATTGCTTAATTAACATAGAAATTACAAAGGCTGACATCCTTTCTAAGTATATTTATGTACTATTTTGCTGCAGTCAAAAATATATTGAAAATACTTTTGATTCTGGATCATTTTCAGTCTGTTTTTAGAGTGGTGTTAAAGGCACACTGCATGTAAGTGTATATAAATTCTTAAATGCTGGCCGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGACGGAGGTGGGCGGATCACGAGGTCAGGAGTTCGGGACAAGCCTGACCAACGTGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCGCGTGTGTATAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGAGGTGTAGGTTGCAGTGAGCCGAGAGCACACCACCGCACTCCAGCCTGGACAACTAGAGCGAGACTCGGTCTCAAAAAAAAAAAATCTTAAATGCTGACACTAAGATGGGATCTTGTTTTTTCTTACCAGTTGCCTCATCTTAATATGAGCACTAAAACTCCATTTATTTGGGTGTCTTCCTATTAATCAAGATTTTACTCTAATAATAGCATGTGTAGCTGTCTCATTTCCAGAACATGGTTAAGGAATTTTCAGCACAAATTATTGCTTGGAGACCATGAGGACTAAAGGACTGTACTTTTTCCTTCATCTGCCAATGTCGTGGGCTAAAGTTTGTTCATTTACAGGGATCAAACTTAACGTAGGTGAGGATTTTTTGGAAGCCTCCGCACAGCTTCCGCTCGACACTCTTGCTTGACTCTGCTTCCCCCAGATGACTTGCATGTTTGCTAAATCCAGTGGTCCCTTCTCATTCTTCATCTTAACGTCACCTGGCAACGGCATTAGACAGAGTTGATCGCTTTTCCTCCTCCTTGAAACATTTCCTCCTCTTAGCTTCCAGGATACCACATCATCTTGGTGTCTTACTACCTAACTGGTCATTCCTTTTTAGCATCCTTTCCTGGGTCCTCCTCTTCAGCCTGAGAGTGCCCAAGGTGGAATTCAGTGATCTCTCATCACTGTCTGTAAATAGCATCTCTGTGCTGATACTTACATCTCCAGCCAGACCTCTCTCTGGAGCTTCAAGCTCCTGTAATGCAGCTGCTCACTCAGTAGCTCCGCTGGCATATCTTAAAAGACATTTCAAACATAACGTGTCCAGAACCGAACAGCTGATCTTCCTGCACAACCCCGCCCCACCCATCGTTTTCCTCACCTCAGCTGATGGCAGCTCCATCCTCACTCTGACACCCCACATTGACTCCATCCTGAAATCAGACTGTGCCACTTCTCAAAACCTTCCCGTTTTACCATGAATACAAGCCAAGGTGGCCATGCCTTGCCACTGCAAGCTCTGTGTTCTCCTCACTTCCTCCTGGCTCCCTCCACCCTTCCCGGGTCCTTGCTGCCACTGGATCCTGCTGGGCCTGCTCCTCTGGAGGCCTTTGGCACTGCCTGGAAATCCTCACCTGCCCCCATATCCACCCAGCGAATTCCCTCTTCTCCTCCAAATCTTCATCCAGATGTTAACTTCCCAATGAAAACTGCCCTGGGTAATCTGCTTAAAATTACAACCTGACCATTAAACCCTACTCCCTCCAGACTTTCTCATACACAGTTGTGTTTCCCTTGACGCAGAGCAGTAATCACATTCTAACGTTTTCATTTATTTCCCTTTCCCTGCTCAATGTGTTTCAAGCACCAAAAGCAGTGCCTGGCACCTAGTAAGCACTCAGGAAATCTATAAATATACGCTGCATGGAGTATATGCTTGCTGTAGAGTGGTAACTGCATCAAGAAAGCACCCTAATGACAGGCAGAAACGGGAACTTTAAGGTTGTTTTAAGTTTGGAAAGGGTTTGACCACGCATGATGCATTCAAATGTCCACCTTGATTTCTCTTAAGCTGCTGCACTTCCTGATTGATCATCACGGATAACCTAATAGAGCTCTCCTATGTGTGTCCTGTTTTGAAAATAAGCTGTTTGCTGAAGATACTGACATTTTATAGTAGATGGTTATTATCTAGTGCAGCATATTTTTCTAGATGAGATACTTGTTTTCTTTCTTTGCAAATATCTAATATTAAAGGAAAGAAAACATAAGGCAGCTCATCTGACTGCTGAATTCCGTGCTTGGGAACTCATTTTCTCTCACATGTTTTTTGCCTAAGGAACAACATCAAGCCTTTTTGTATCAGTTAATGCAACATCACCACCAGCAGCACCACCAACCTGAACTTCAGCAGCTGCAGATCCCTGGACCAACACAAATACCCATAAACAACCTTCTTGCAG
Seq C2 exon
GTACACAGGCACCCCCACTTCACACAGCTACCACCAACCCATTTCTCACCATCCATGGAGATAATGCAAGTCAGAAAGTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078403:ENST00000377072:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains