MmuINT0099336 @ mm10
Intron Retention
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18207783-18208947:+
Coord C1 exon
chr2:18207783-18207879
Coord A exon
chr2:18207880-18208749
Coord C2 exon
chr2:18208750-18208947
Length
870 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TCATCCCACTTTTTCTGAAGGAA
3' ss Score
6.72
Exon sequences
Seq C1 exon
TGCCTCGGGACTAGGGCTGCTGTCGGACCAGCAGAGACAGATGTTTATCCAGCAGCAGCAGTTCCAGCAGCTGTTAAACTCCCAGCAGCTCACACCC
Seq A exon
GTAAGTCCTTTGTTTGACAAGGTTTTACTTTTGTCAGTGTCTGGTGTTGTGGCTATCCCGGGCTCCTCCTTTGTGAATGTGGGTCTTAGAAGTTGCTGTTTCTTAGCCATCTCGGAACCATGTGCTGTCTACAATGGCCTAGATTCTCCTGCATCATTCATTAGTCAAGACAGTGCGTATAGGCCAATCTGATTGAAGTATTTTCTCAATTGAGGGTCCCTCTTCAGATAACCTGCTTGTGTGTTAACAAAGCCAAGCAGCACAGCATCCAACTGCTGCTGTTTCTGTTGTGTGTTCTTCACGGACAGCCTCATTTGAAGACACTTCTGTATTTGCCTCTACTGTGTTTTAAAAATGGGCAACTCAGCTGGATGACAGCAGCAGCACACACCTTTCATCCCAGCACTTTGGTTGCAGAAGGCAGATGGATCTTTGAATTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCCTGAAAAACAAAAATCAACCAAATCAATTAAAAATGGTCAATTCCCAAGTGGTGCTGGGTTACTACCTATGCAGTTGCTTTCCTGGATGCTGGTCTTTATCCTGTTTGTTTTTAAACAGACTTCACCATAGTCTTGGCTAGCATGACACTATGGAGACCAAACTGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCGATCTGCATCTGCTTGCCAGTCAATCAAATGCTGGGATTCAAGGCCTGTGCCACCACACTCAGCTCTTGTTCTCTTAGCAGTGACTGTGCTTTAAATAACACTGTAGGAGAGAGATGGAGAAGGCAGGCTTTGCTGACTCTGGCTGAAGCTCATCTTTCATCCCACTTTTTCTGAAG
Seq C2 exon
GAACAGCATCAGGCCTTCCTATACCAGCTGATGCAGCAGCAGCACCACCCGCCTGAGCTCCAGCAGCTGCAGCTCCCGGGACCCACGCAGATCCCCATCAACAATCTCCTTGCAGGTGCTCAGGCGCCTCCACTCCACACAGCTACCACCAACCCCTTCCTCACCATCCACGGGGACAGCACGAGCCAGAAGGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743:ENSMUST00000114680:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCGGGACTAGGGCT
R:
GTGACCTTCTGGCTCGTGC
Band lengths:
294-1164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types