HsaINT0103738 @ hg19
Intron Retention
Gene
ENSG00000108292 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:7138]
Coordinates
chr17:36864016-36865529:+
Coord C1 exon
chr17:36864016-36864125
Coord A exon
chr17:36864126-36865425
Coord C2 exon
chr17:36865426-36865529
Length
1300 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
GATTGCGCTGTGTCCTGCAGACC
3' ss Score
9.3
Exon sequences
Seq C1 exon
GCTGGGCACACGTGGTGTGTGCCCTCTACATCCCCGAGGTGCAATTTGCCAACGTGCTCACCATGGAGCCCATCGTGCTGCAGTACGTGCCTCATGATCGCTTCAACAAG
Seq A exon
GTCAGCGGCCCCCCGCCGTGTCCCCTACCAGTTCCCTCCCATCTATGGGTTCCTCCAACGCTCTCTTCATCCGGTGTAATTTGATTCTGTCCAACGAGCACTGAAAGGGAACTTGGGAGGTGGGTAGGTACCTACCAGTGAACCACCCTTCTGTTGACAGACACACTCATGCTCTGGCACTCAGGTGAAATAGTAGGCTCCCCTGCAGTAGTTCTGCCAGAGGGTAGACCTTCGCAGTTACTTCATTCATTCATTCGCTGGACACATTTTATTAAGTGCCTACTATGTGCCAGACCTGGTGCAAGGTAGCTGGCACACGCTGTTCGGTGCTGATCAAGACAGGTGTGCTGCCCGCTCAATGGAACGCAAGTTCTTGCATGCGAAGACTATAAATATCAGTAAAAAGGCAAAGTAAATGCAATTTGTGATAAATGCTGTGAAGAAAATAAGACACTAAAATAAAGACCTGGTGGGGGCTTACTTTAGACCAGATGGTAAAGGAAGGAGACATTTAGGCTGAGACCTGGGGCGTGAGAAGGAGCCAGCTTCCAGGAGGGTAAGGGCCCCCAGGTTCCAGGCAGAAGAAAGCCTGGGCAGAGGCACAGAGGTGGGCATAAGCTCCCTAGTGAGCAAGACAGACAAAGGCCTTGGCCTTTCAGAGCTAACCATCCAAGGACTGTGCTACCCAGCATAGTAGCCATCGGCCACACGTGGCTACATAAATTAATCAAAATTAAAAGCAGGCTGGGTGTGGTGGCTCACACCTGTAATCCCAGACTTTGGGAGGCTGAGGGGGGTGGATCACCTAAGGTCAGGAGTTTGAGACCGGCCTGGTCAACATGATGAGACCCCATCTCTAGAAAAATACAAAAATTAGCTGGGCATGGTGGTGGGCACCTGCAGTCCCAGCTACTCGGGAGGTTGAGGCAGGAGAATCCCTGGAACCCAGGAGGCGGAGGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAACCTGGGCGACAGAGGGAGACTCCGTCTCAAATAAATAAATAAAAATAAACAACAATTAAATACAGTTTAGAATCTAGTTCCTCAGTCACGCTAGCCATAGTTCAAGTGCTTATAGCCCATGTGACTGGTGGCATTTGTCTTGGACGGCGCAGACCATAGAGCGTTTTCATCACTGCAGACAGTTCTGTGGGATAGCACTGATCTAAGACTGTAGAGAGCAAATGGAATGGAGGGGGTGGCCTAAGGACCATCAGTAGAACAGGGGCTCCCTGGAGGAGGGGACGATTGCGCTGTGTCCTGCAG
Seq C2 exon
ACCTGTTACATCTGCGAGGAGCAGGGCCGGGAGAGCAAGGCGGCCTCGGGAGCCTGCATGACCTGTAACCGCCATGGATGTCGACAAGCTTTCCACGTCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108292-MLLT6:NM_005937:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGGTGTGTGCCCTCTA
R:
CAGGTGACGTGGAAAGCTTGT
Band lengths:
206-1506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)