MmuINT0099401 @ mm10
Intron Retention
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97665730-97666893:+
Coord C1 exon
chr11:97665730-97665839
Coord A exon
chr11:97665840-97666789
Coord C2 exon
chr11:97666790-97666893
Length
950 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
3' ss Seq
AATTGTGCTGTGCCCCACAGACC
3' ss Score
9.27
Exon sequences
Seq C1 exon
GCTGGGCCCATGTGGTGTGCGCCCTCTACATCCCGGAGGTGCAGTTCGCCAACGTGCTCACGATGGAGCCCATCGTTCTGCAGTACGTGCCTCATGATCGCTTCAACAAG
Seq A exon
GTTAGCGGCCCTCACTCCTCCCTTTCCTGGTAGCAATCCTGGGTGCCACCGTTGCGCTCCGAGCTCCCTCGGTAGCACAGCCAGAGGGTTGCTCATAGGTCACATTTTATTAAGTTTATAACACATGACAGGCACAGTACAGCAGGTACCTAGTGCTTGCCGTTAATCAAGACAGAAGTGTAAACAGGCTTTGAGATAGAGGATACCCTGTGAGGCTTGCTTGGGTATCTGGTGGTCATGGAAGGAGACATTTAGGTTGGGATCTGGGGCATGAGAAAGAACCGACTTTGTGGAAGGCTGGCCAGTCCCAGGTTCTATGAAAAAGACACAGTGTGTCTGTATGTAGTCCAGCAAGTGGGACAGTAGGTACATCGGGGCCTCTCAAACTTTACCAAGGATTGCACTGTCTAACGCAGTGGCTGACTGCCTGTGAATGTGGAAATTAAATTGAATACTCGGGCTGCAGAGATGGCTTGGTGGTTAAGAGCACTTGCTGCTCTAGCAGAGAATCCAGGTTTGGTTCCTGGCGCCCTCATGACAGCTCAAAACCATGTTTACATCCAATTCCAGGGAATCAGTCTGGTGCCCTCTTCTGGCCATTAAGGGCACCAGATATCCACTGTGATATACGTATATATGTACGTGTATACATACGTATGGCCAAGTACACATCTAAGATAAGAAGAGATAAACCTTTAAATTGAATACTTAGACCTCATTTTCTCAGCCTCATCAAGCTGCATTTCAAGTGCTTGGTGGTCCTGTGACATTGCGTTTACTGGCTTAGATTGTATAGGTTAGAGAACCTTTCCGTCCCTGTAGAAAATTCTACTGGACAGTACTGATCTGGATGGTGGGGGTCAGGGTGGCATTGAGGACAGGCCAAAGGATCCCTCAGCAGGAGAGGTAGGGTTCCCTGGAGGAGGGGTCAATTGTGCTGTGCCCCACAG
Seq C2 exon
ACCTGTTACATCTGTGAGGAACAGGGCCGGGAGAGCAAAGCTGCCTCGGGAGCCTGCATGACCTGTAACCGCCACGGATGCCGACAAGCTTTCCATGTCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437:ENSMUST00000044730:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGCCCATGTGGTGT
R:
CAGGTGACATGGAAAGCTTGTC
Band lengths:
214-1164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types