HsaINT0105693 @ hg19
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:HGNC Symbol;Acc:7380]
Coordinates
chr3:49725183-49726196:-
Coord C1 exon
chr3:49726031-49726196
Coord A exon
chr3:49725331-49726030
Coord C2 exon
chr3:49725183-49725330
Length
700 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CACTCATGCCTACTCTGCAGGGC
3' ss Score
6.66
Exon sequences
Seq C1 exon
CAGCAGGCCCTGAGCTGACGTGTGGAGCCAGAGCCACCCAATCCCGTAGGGACAGGTTTCACAACTTCCCGGATGGGGCTGTGGTGGGTCACAGTGCAGCCTCCAGCCAGAAGGATGGGGTGGCTCCCACTCCTGCTGCTTCTGACTCAATGCTTAGGGGTCCCTG
Seq A exon
GTAAGTGCCCCCAACCCTGATCCCCATCTGCCTTCAGGAGGGGGTTGGCCCCATTCTCCTATTCTAGGATGAGAAAAAAGTCGGGGAGCCAGAGGCTCAGTGGGCATGGGGCAGTGACCTTGCCCTCTTGAGCACAGCTGGGAAGCCCTAGGAACACATAGACATTGCCCACTTAGGCCTCTATTAGCACGTCTGCTCTAGCACTGAAGCAGTGTCAGGACCACACAGATGCACGCACACAGCAGGCAGTGACCCCTCCTGAGCCTGATCTACCCCTCTAACCTAGCATATGCCTTTGTGCAGGTGAGAGCCCAGATTTGGAGTCTGAATGCCTAGCCAGGGCCCCTGGCTGGGTAATGTGATGGCTCTGAGCCTTAGCATTCTCATTTGAGAGATGAGGTGGGGCAAGCTTCATCACCCACTGCTCTCACAGAGCGTATGTGTTAGATCTGAGCCCGGTGCCTGGGCCACTAAACAGAGGCACCGGTGATAACTACCAAGTCTGGGCCTGCTTCCCAGGGGAAATTTTTTTCACAAGTATCTGTGCAGGGGGCTAGACTGGCCCTTGAAAGTGCATACAGGGTCCATCCCAGAAGCCTTGTAGCTTTGATCCCCTGAATGAACAAAGTGTGGACATGCCAATACACATTACTGACATGTATGCCCACCTGACCTGCACCCACTCATGCCTACTCTGCAG
Seq C2 exon
GGCAGCGCTCGCCATTGAATGACTTCCAAGTGCTCCGGGGCACAGAGCTACAGCACCTGCTACATGCGGTGGTGCCCGGGCCTTGGCAGGAGGATGTGGCAGATGCTGAAGAGTGTGCTGGTCGCTGTGGGCCCTTAATGGACTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-MST1:NM_020998:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(5.4=27.8)
A:
NA
C2:
PF0002421=PAN_1=FE(53.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGCCCTGAGCTGA
R:
CAGTCCATTAAGGGCCCACAG
Band lengths:
311-1011
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)