BtaINT0095635 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51080758-51081852:+
Coord C1 exon
chr22:51080758-51080833
Coord A exon
chr22:51080834-51081704
Coord C2 exon
chr22:51081705-51081852
Length
871 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCGCATGCCCACCCTGCAGGGC
3' ss Score
6.61
Exon sequences
Seq C1 exon
ACAGTGCAGCCTCCAGCCAGGAGGATGGGGTGGCTGCCACTCCTGCTGCTTCTGATATGGTTCTCAGGGGCCCCTG
Seq A exon
GTAAGTGCCCTTCCCCTCAGCCCTGATCCCCATCTGCCTTCAGAAAGGGGCCGGCCCCAGGCCCATCCTGCTATCTGAGCCAGGAACTTGCTTTCCTACTGAGCCTGTAGCAGTGAGTGACCTTGGCTTCTTTCACAGAGCTGGGCAGCCAAAGGAACACAAACACATTGCCTATTCAGGCCTGCGGTGAAATGTCTGCTGTAGCTTTGAGGCAGTGTTAGGACCATAGACACATACACACATGCAGGCATTTATCCCTTATGAACCAGACCTAATCCTCCTACCTAGCATATACCCTTATGCTGGTTAGGTGGCTCAGACAGTAAAGAATCTGTCTGCGATGCAGGAGACCTAGGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCATGAGAATCCCATGGACAGAGGAGCTTGGCAGGCTACAGTCCATGGGGTCGCAAAGAGTTGGACAGGACTGAGCGACCAACACTTTCAGCATTTACCCTTATGTTGGTTAGAACTTAGACTTGGAGTCAGAATGCTTGGGTTGGGCCTTTGCCTTGTTAATAAGATAGCTCTGGGCCTTCACATCCTCACGTGAGAAATGAGCTAGCATAAGCTCCATAGGGCCAGCACCAGCAGGCACTGCGCTCAGAGTATATGTTTTACAGCTGAGCCCAGTGCCTTGCCCACTAAACAGGTGCACTAGTGATTACAGTCACGTCTGAGCCTGCTCCTCCCATCCAGTACAGGGGTCTGACCCTTGAAGGGTCACTGACCCACTCCAGAGGCCTTGTATTTTGATCTCCTGAATGAATAAAGTGTGCACATGCTGATATGCATGTGCTGATTCGCATGCCCACCCTGCAG
Seq C2 exon
GGCAGCGCTCGCCCTTGAATGACTTCCAGGTGCTTCGGGGTACGGAGCTGCAACACCTGCTACACTCAGTGGGGCCTGGGCCTTGGCAAGAAGATGTGGCAAATGCTGAGGAATGTGCAGGCCTCTGTGGGCCCCTCCTGGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0002421=PAN_1=PU(51.8=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAGCCTCCAGCCAG
R:
CTGCAGTCCAGGAGGGGC
Band lengths:
222-1093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]