HsaINT1023626 @ hg38
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49687750-49689053:-
Coord C1 exon
chr3:49688598-49689053
Coord A exon
chr3:49687898-49688597
Coord C2 exon
chr3:49687750-49687897
Length
700 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CACTCATGCCTACTCTGCAGGGC
3' ss Score
6.66
Exon sequences
Seq C1 exon
GAAGCTGGGGCAAGTAATTTTCCCCAATTTACAGGGAAAAACCGAAATTCAGAAAAGTTTAATGTCACCCAGGGGCTGGAGCCCAGACCTCTGGCAGCTCTCACTTTCACAATGCCCTTGGGCTGACTAGGCTGCAGAGGGGTTTCACCCCAACCCCAGGGCACCTCAAGTGTCCCCACCAAACCTTCCTAACACCTGTCCACTAAGCTGTACTAGGCCCTTGCAACTGACCTATGGGACCTGAGGCCTGGCCCCTCATGGCTCCTGTCACCAGGTCTCAGGTCAGGGTCCAGCAGGCCCTGAGCTGACGTGTGGAGCCAGAGCCACCCAATCCCGTAGGGACAGGTTTCACAACTTCCCGGATGGGGCTGTGGTGGGTCACAGTGCAGCCTCCAGCCAGAAGGATGGGGTGGCTCCCACTCCTGCTGCTTCTGACTCAATGCTTAGGGGTCCCTG
Seq A exon
GTAAGTGCCCCCAACCCTGATCCCCATCTGCCTTCAGGAGGGGGTTGGCCCCATTCTCCTATTCTAGGATGAGAAAAAAGTCGGGGAGCCAGAGGCTCAGTGGGCATGGGGCAGTGACCTTGCCCTCTTGAGCACAGCTGGGAAGCCCTAGGAACACATAGACATTGCCCACTTAGGCCTCTATTAGCACGTCTGCTCTAGCACTGAAGCAGTGTCAGGACCACACAGATGCACGCACACAGCAGGCAGTGACCCCTCCTGAGCCTGATCTACCCCTCTAACCTAGCATATGCCTTTGTGCAGGTGAGAGCCCAGATTTGGAGTCTGAATGCCTAGCCAGGGCCCCTGGCTGGGTAATGTGATGGCTCTGAGCCTTAGCATTCTCATTTGAGAGATGAGGTGGGGCAAGCTTCATCACCCACTGCTCTCACAGAGCGTATGTGTTAGATCTGAGCCCGGTGCCTGGGCCACTAAACAGAGGCACCGGTGATAACTACCAAGTCTGGGCCTGCTTCCCAGGGGAAATTTTTTTCACAAGTATCTGTGCAGGGGGCTAGACTGGCCCTTGAAAGTGCATACAGGGTCCATCCCAGAAGCCTTGTAGCTTTGATCCCCTGAATGAACAAAGTGTGGACATGCCAATACACATTACTGACATGTATGCCCACCTGACCTGCACCCACTCATGCCTACTCTGCAG
Seq C2 exon
GGCAGCGCTCGCCATTGAATGACTTCCAAGTGCTCCGGGGCACAGAGCTACAGCACCTGCTACATGCGGTGGTGCCCGGGCCTTGGCAGGAGGATGTGGCAGATGCTGAAGAGTGTGCTGGTCGCTGTGGGCCCTTAATGGACTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531:ENST00000449682:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(2.2=6.2)
A:
NA
C2:
PF0002421=PAN_1=FE(53.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACTGACCTATGGGACCT
R:
AGCACACTCTTCAGCATCTGC
Band lengths:
354-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains