MmuINT0101353 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108080436-108081292:+
Coord C1 exon
chr9:108080436-108080530
Coord A exon
chr9:108080531-108081144
Coord C2 exon
chr9:108081145-108081292
Length
614 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CGCTCATGCTCACCACGCAGGGC
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATGGGGCTGTGGTGGGTCACCGTGCAGCCTCCAGCTTAGGAGAATGGGGTGGCTCCCACTTCTGCTGCTTCTGGTACAGTGTTCAAGGGCTCTTG
Seq A exon
GTGAGTGTCACCCACCCTGATCCCAGTCTGCCTTCACGAGGGAGTTCACCCCTGGTCTACATAGCTATTCTCATTGAGAGTTTACTTTTCTTTGGGTCCGGGATCAGTGACCTTGGCCTGTTGAGCAGAGCTGAGAAGGCCTGGGAATTCAAATACACACAGTCTGATCAGGACTACATTAGAGCATACTGTAGCCCAGAGGCAGTCTTTCAACCAGAGAAACTATCCAACCCAGAAGGCAGGGCTCCTAAGCCCGATGCACCACTGTAACTTATGCCTTTATTCTGGTGAGAGGCCAGACTTGGGGCCTTCCCCAGGAAGTGTCCAAGCATTCTCATCTGAGGGGTGAGAAGGGGCAAGTGTCACAAGGCCAACACACTGTCACCCAAATTCTCATGGAGTGGATGTGGTAGACCAGAGCCCAGTGCCAGGTCTCCTAGCAGATGGGCAATAATCACTGTATCTGGGCCTCCCCAGCTCACTGGGCATGAAGGGACTTGCTGGGCCCTTGAAAATATACATAAGGCCTGCCCCAAAGACCTTGTATTAGATTCCCTAAATGAACAAAAGATAGGGTGTGTTAAAGTACTAATGCGCTCATGCTCACCACGCAG
Seq C2 exon
GGCAGCGCTCACCACTGAATGACTTCCAGCTGTTCCGGGGCACAGAGTTAAGGAACCTGTTACACACAGCGGTGCCGGGGCCATGGCAGGAGGATGTGGCAGATGCTGAGGAGTGTGCTAGGCGCTGTGGGCCCCTTCTGGACTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(5.3=27.8)
A:
NA
C2:
PF0002421=PAN_1=FE(52.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGCTGTGGTGGGTC
R:
GACAGTCCAGAAGGGGCCC
Band lengths:
242-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types