HsaINT0105832 @ hg19
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105935804-105936329:+
Coord C1 exon
chr14:105935804-105935835
Coord A exon
chr14:105935836-105936177
Coord C2 exon
chr14:105936178-105936329
Length
342 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GAAGTGCACCCCCTCTGCAGGGA
3' ss Score
6.65
Exon sequences
Seq C1 exon
GTCTGGCAAACCACGGACAGGCCAGGCACATG
Seq A exon
GTAAGAGGAACAACCCATGATGGGGTACGGTGCGCTCACCCATGAGCTCTCTGGGGTGTTGGGAAGAGGCCTGGCCAGCCCTGCCAGGTGCCACGTGGAAGCTTCCAGGAGGCCTGGCAAGACCAGAGGGGCTGCAGCATGTGGGGGCCATGGCCCCTGTGCCAGGCCCAGCGGTGTGCGGCCGACCAGCCCTCAGGGCTGCCCTGGGCCAGGCTGGGGGTCCGTGTAACTCACTGGGGTGGTGGGGGGTTGGCCAGGCACAGCACCTCCCAGCGGGAGCCCTGCAGGTTGAGGTGGAGCTGGCCCTTGGCTGGCTGCCCAGGAAGTGCACCCCCTCTGCAG
Seq C2 exon
GGACCAAGCCGGAACCTCCTGCTCAACGGGAAGTCCTACCCCACCAAAGTGCGCCTGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTTCTACATGGCCACAGAGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-MTA1:NM_004689:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.987 A=NA C2=0.798
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGCAAACCACGGACAG
R:
GGTCTCCTCTGTGGCCATGTA
Band lengths:
182-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)