HsaINT0105832 @ hg38
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105469467-105469992:+
Coord C1 exon
chr14:105469467-105469498
Coord A exon
chr14:105469499-105469840
Coord C2 exon
chr14:105469841-105469992
Length
342 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GAAGTGCACCCCCTCTGCAGGGA
3' ss Score
6.65
Exon sequences
Seq C1 exon
GTCTGGCAAACCACGGACAGGCCAGGCACATG
Seq A exon
GTAAGAGGAACAACCCATGATGGGGTACGGTGCGCTCACCCATGAGCTCTCTGGGGTGTTGGGAAGAGGCCTGGCCAGCCCTGCCAGGTGCCACGTGGAAGCTTCCAGGAGGCCTGGCAAGACCAGAGGGGCTGCAGCATGTGGGGGCCATGGCCCCTGTGCCAGGCCCAGCGGTGTGCGGCCGACCAGCCCTCAGGGCTGCCCTGGGCCAGGCTGGGGGTCCGTGTAACTCACTGGGGTGGTGGGGGGTTGGCCAGGCACAGCACCTCCCAGCGGGAGCCCTGCAGGTTGAGGTGGAGCTGGCCCTTGGCTGGCTGCCCAGGAAGTGCACCCCCTCTGCAG
Seq C2 exon
GGACCAAGCCGGAACCTCCTGCTCAACGGGAAGTCCTACCCCACCAAAGTGCGCCTGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTTCTACATGGCCACAGAGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979:ENST00000331320:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.794
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGCAAACCACGGACAG
R:
GGTCTCCTCTGTGGCCATGTA
Band lengths:
182-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development