DreINT0098360 @ danRer10
Intron Retention
Gene
ENSDARG00000013031 | mta2
Description
metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
Coordinates
chr7:17685849-17686197:+
Coord C1 exon
chr7:17685849-17685967
Coord A exon
chr7:17685968-17686054
Coord C2 exon
chr7:17686055-17686197
Length
87 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AGCACCCTCATTGGCCACAGGCT
3' ss Score
5.16
Exon sequences
Seq C1 exon
CCATTCAAGCTCCTTTGAAACTCAAAGCCCCTCGAGGTGCTCCAACCCCGATCAACCGTAACCAGGTTAACCAGCCTCGCAGCGCATCTGCCCTGCTGGGCAAAAGGCCCTTCGACAAT
Seq A exon
GTGAGTATCCCATACTAATGTACATTAGCCTTTCCCAGAGGTAGAAAAAGTAGCGTACATTGATCTAAGCACCCTCATTGGCCACAG
Seq C2 exon
GCTGGAGGTCATTTGCTCTCCACCAACGGAAGACCGTTTGCCATGGGAATGAGAGCAGCCAACCAGTCCGTCATCAAGAGGCAGAAAGTCAGTCAAGGCGATGCTCCCAATCCTGTGGTGTTTGTGGCTACGAAAGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013031:ENSDART00000147564:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.639
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTCAAAGCCCCTCGAGG
R:
CTGGTTGGCTGCTCTCATTCC
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]