RnoINT0094979 @ rn6
Intron Retention
Gene
ENSRNOG00000019913 | Mta2
Description
metastasis associated 1 family, member 2 [Source:RGD Symbol;Acc:1306743]
Coordinates
chr1:225148247-225148615:+
Coord C1 exon
chr1:225148247-225148365
Coord A exon
chr1:225148366-225148466
Coord C2 exon
chr1:225148467-225148615
Length
101 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TACACCATGTCCTTTTCCAGATG
3' ss Score
9.19
Exon sequences
Seq C1 exon
TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGCACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT
Seq A exon
GTGAGTGACAGTGGACTGGGAAGGCTGAATGGGGTGGGCTTTTATTTCTAGTAGGAGTCTAAGGAAGGTAGCTCCTTCATGTACACCATGTCCTTTTCCAG
Seq C2 exon
ATGGCAGGGGCAGGGGTTCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019913:ENSRNOT00000027141:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCACCTCTGAAACCAA
R:
TGTGGCCACAAATACCACTGG
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]