BtaINT0095715 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011865 | MTA2
Description
Bos taurus metastasis associated 1 family, member 2 (MTA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075712]
Coordinates
chr29:41637532-41637893:-
Coord C1 exon
chr29:41637775-41637893
Coord A exon
chr29:41637675-41637774
Coord C2 exon
chr29:41637532-41637674
Length
100 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GTTGCCCCACCTTTTTCCAGATG
3' ss Score
8.96
Exon sequences
Seq C1 exon
TGGCCCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCGATCAACAGAAATCAGCTGACCCAGAACCGGGGACTGGGGGGCATCATGGTGAAACGGGCCTATGAGACT
Seq A exon
GTGAGTGAGCCAAGTGGAGTTGGGTGGGCTTTTATAGCTTTTATATCTGATGGGTGTCTGGGAGTCCGCTCTCTCACTGTGTTGCCCCACCTTTTTCCAG
Seq C2 exon
ATGGCAGGAGTTCCTTTCTCTGCCAATGGAAGGCCTCTGGCCTCAGGGATTCGCTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTCAACCCAGCTGATGCACCTAATCCTGTGGTGTTTGTAGCCACAAAAGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011865:ENSBTAT00000015748:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCACCTCTGAAACCAAA
R:
TGTGGCTACAAACACCACAGG
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]