MmuINT0101439 @ mm9
Intron Retention
Gene
ENSMUSG00000071646 | Mta2
Description
metastasis-associated gene family, member 2 [Source:MGI Symbol;Acc:MGI:1346340]
Coordinates
chr19:9025402-9025774:+
Coord C1 exon
chr19:9025402-9025520
Coord A exon
chr19:9025521-9025625
Coord C2 exon
chr19:9025626-9025774
Length
105 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TGTACCCCATCCTTTTCCAGATG
3' ss Score
11.43
Exon sequences
Seq C1 exon
TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT
Seq A exon
GTGAGTTGACAGAGTGGGTTGGGAAAGCTGAACAGGGTGGGCTTTTGTTTCTAATAGGAGTCTAAGGAAGGTAGTTCCTTCATTATGTACCCCATCCTTTTCCAG
Seq C2 exon
ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071646-Mta2:NM_011842:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCACCTCTGAAACCAA
R:
TGTGGCCACAAATACCACTGG
Band lengths:
254-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: