HsaINT0105849 @ hg19
Intron Retention
Gene
ENSG00000149480 | MTA2
Description
metastasis associated 1 family, member 2 [Source:HGNC Symbol;Acc:7411]
Coordinates
chr11:62361731-62362106:-
Coord C1 exon
chr11:62361988-62362106
Coord A exon
chr11:62361880-62361987
Coord C2 exon
chr11:62361731-62361879
Length
108 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCATCCTACCCCTTTTCCAGATG
3' ss Score
9.94
Exon sequences
Seq C1 exon
TGGCCCAGGCACCCCTGAAACCAAAAACACCTCGGGGTACCAAGACACCGATCAACAGAAACCAGCTGTCCCAGAACCGGGGACTGGGGGGCATTATGGTGAAACGGGCCTATGAGACT
Seq A exon
GTGAGTTGACAGAAAGGGGTGGGCCAGATTGAGTTGGGTGGGCTTTTGTCTCTCATAGGAGTCTGAGAGGGTCCCTTCCCTCATTGTGCCATCCTACCCCTTTTCCAG
Seq C2 exon
ATGGCAGGGGCAGGGGTTCCTTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCAGCTGATGCCCCCAATCCTGTGGTGTTTGTGGCCACAAAGGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149480-MTA2:NM_004739:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACCCCTGAAACCAAAAA
R:
GGCCACAAACACCACAGGATT
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)