HsaINT0105849 @ hg38
Intron Retention
Gene
ENSG00000149480 | MTA2
Description
metastasis associated 1 family member 2 [Source:HGNC Symbol;Acc:HGNC:7411]
Coordinates
chr11:62594259-62594634:-
Coord C1 exon
chr11:62594516-62594634
Coord A exon
chr11:62594408-62594515
Coord C2 exon
chr11:62594259-62594407
Length
108 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCATCCTACCCCTTTTCCAGATG
3' ss Score
9.94
Exon sequences
Seq C1 exon
TGGCCCAGGCACCCCTGAAACCAAAAACACCTCGGGGTACCAAGACACCGATCAACAGAAACCAGCTGTCCCAGAACCGGGGACTGGGGGGCATTATGGTGAAACGGGCCTATGAGACT
Seq A exon
GTGAGTTGACAGAAAGGGGTGGGCCAGATTGAGTTGGGTGGGCTTTTGTCTCTCATAGGAGTCTGAGAGGGTCCCTTCCCTCATTGTGCCATCCTACCCCTTTTCCAG
Seq C2 exon
ATGGCAGGGGCAGGGGTTCCTTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCAGCTGATGCCCCCAATCCTGTGGTGTTTGTGGCCACAAAGGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149480:ENST00000278823:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACCCCTGAAACCAAAAA
R:
GGCCACAAACACCACAGGATT
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development