HsaINT0105838 @ hg38
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105450261-105454310:+
Coord C1 exon
chr14:105450261-105450324
Coord A exon
chr14:105450325-105454192
Coord C2 exon
chr14:105454193-105454310
Length
3868 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCTCCTGTGGTGTTTTCCAGGAT
3' ss Score
11.16
Exon sequences
Seq C1 exon
GGGCAAGTGCAGCGTCACCCTGCTCAACGAGACCGAGTCGCTCAAGTCCTACCTGGAGCGGGAG
Seq A exon
GTGAGGCCCAGCCCGGCCTGGTCTGCCGCAGCCAGTCCCGGGCCACTGTTTCCTCTACCTATGACCTCTGCTGGCCTGGGCGGCGGAGACGATTTTCCCTCCTCCCTCTAGGCCCAGGCTGTTCTGGGGGGAAGCGGGGATTGCGTCCTGACTGTCACTTCCAGGTGTCCTGGTGTGTGGCCGCCCCCACCCTACGCGTCCAGAGTTGTGGGCCAGGAGCTTGGAGCTCTTTCCTCTTGCCACTGCCACCCAGACAGCCAGCGAGGGGAGGTCCCCCTGGGGAGGGTGTGGCTGAGGCAGGTGGGGGCAGGGGCCACCTGAGTCTTCGCAGGAGTCTTGGCTGGTCTCTCCTGGGCGGTGGGCAGAGTCCTGGTAGGCCCACCTTGGGGGTCACTGTGATTATACGGTGTTACCAGGTGATTCTTATCTGGGGGTCACCTGTGATTATACGGTGTTAACCTGCCGTATAGCATCCCCCAAGGCGTGACAACCAAAAAATGTGTCCCGACAATGCCATACATCCCTGGGGAGCAGTGTCGCCTGACGGAGAGCGGTGGCACTGAGGCTGCTGTGAGATCCAGCGAACGGGAGGGTTGGGTTTTCTGAGGCCACGTGGGGGCAAAAGCGTCTGGAGTGTGTTGGTTCCCTGGAGTGCCTGTCACAGTTGCGGGGCACACCTGCCAAGGGGCAGGCGCATCTCCAGGCCTAGGGCTTGGCCTCCCACGGGCTCTGCTGCCACCTGGCTGGAGTCTTGTGACCTGAACACCCCCAGCGTGTCCAGTCAGCTCAGATGCAGGTTGCTGGATGCGGCCCCCACCCTGCCCATCCCAGGGGGGCTCATCTCTGTCGTGGCCATCGGCGCTCTGGCATGGGCTCTGAAGGATCCAGGATGGCCACGGTGTGTCCCAAGCTCAGCCCTGCACTACCTCTGTGGCCCCGGTCCCCATTCCCACCACACAGCCTGGAAACAGGCGTGAAGGGCGACAGTGGCTCAGCTAGGGCTGTGGTCGTGCCTTAGCTCAGAGTCATGAGCAGGCAGAGAAGAGCAGGCAGGGCTTGGCCTGGGGTCGTAACACATGCGTGGAGCATGGGCAGGGCTCGAACCCTCTCAGGCTGCCAGACCAGCTTCCCAGAAGGCTGAGCCACAACATGCTGGGCGGGAGCAGAGGCTGTGGGGGTCGCTGTGAAGGCTTCCACTCAGGAATGAGGAGTGCCCTTATTGACAGAGCCACACAGAGAGGGTGAGACTGCAGAAATGTATCTGTGGGCACAGAAAATGTTTGTTAGCAAAAAAGGCCCGTGAGGAAGCAGCAGGTGCAGTGACAAGCCTGTCTGCACTGTGTCCGCCCAGAAACGGCCGGGTCCATGCTTGCCGGGGACAAAACAGGCTGCTCAGGCACCCTGAAACCCTCCTGCTGCACGATGCAGCCCTTCCCCCCTTTTTCTTTTTCTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTACAGTGGCGCGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGATTACAGACGTGTGTCACCATGTCCGGCTAATTTTTTGTATTTTTAGTAGAAATGGGGTTTCACCATGTTAGCCGGGCTGGTCTCAAACTCCTGACCTCAGGTGATCATCCCGCCTCTGCCTCCCGAACTGTTGGGATTACAGGCATGAGCCACTGCGCCCAGCCACTTCCCTCTTCTTTCTTACCTGGGGTTTCTGAACAGCCCCAATATGGGAATTTAATGTAACAGGCTCAGGGTGAGTACACTTAGCACCTGGCAGAAGCTTGTGCCACTGGCCCCTGGGCGATCGTGCCCCTGCCTCGCCTCAAATAACCCTCACTGATGAAGTCCTGATAAACACAGGCTCATGTCACAGATAAGCAAGAGTGCAGAAACAGCACACAGCAGTCACAGACACACCCAGGCCCTGACCAGTGGCGCAGTCCGGCACCAAATAGAAACCACTTGTGTTTATTAATTTAAAGAAACAGGCCGGGTACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCCGGGGGAATCACTTGAGCTCAGGAGTTCAAGAGCAGCCTGGGCATCATAGTGAGACCTCACCTCTACAAAAGTAAAAAACATTAGCCAGGCGTGGTGGTGCACACTTACTGTTGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATTGCTTGAGTCAAGAGGCGGAGGCTTCACTGAAGCAAGATCGCACCACTGTACTCTATCTTGGGTGATAGAGCAAGACCCTATCTCCAAAAAAAATAAAAGATCCAGGCAGAGTAGGAGCTGAGGCTGAGGCTGGCAGCTGGCCTCTGGATAGTCGTGTCAGTTCAAGAGGACGAAGGCCCTGAAGCATGGCTCGTGGTCACACATGGAGCAGGTGTCATGCTGGACTTTAAAGGTAGCTCTTGAAAGAAAACACGCAGAGTAGCTTTCAGAATAGGAGAGACAGGGAAAGCGGGTAAGGGCTGGAAAAGACGACCCACAGGAATCAGGAGGATGACCTGGAAACGGGAGGGTGATTGGACGCCAGGCACACATGCAGAAGAAAGTGCAGCCCTGGCTGAGGCCAGGTGCTCAGGCTGGGACTCCAGGGTCAGGCCCGGACAGGCCTGCTTCAAAAATCATCAGAACCAGCCCAGTGCAGGACACACAATGCCGGACAGCAAAAGGTTGGCAAAGGCCATGTCCTGGAAATGCCATCCCAGAGGCAGCCTGGGGGCCCTGGTGTGAGGTTGCCTGAGATGGAATGCTGGCGGGAAGGGCCGCGCCTGCTGCGCGGGTGGCGGCCGGCGGTGCTGAGCCTGGAATGCTCCGTAGCGCTCCAGCGGTGGCCGCTCCTCCAAGGTTGTGCCCAGAACTCCTGATTTCTGTTGCTCTTAAACACCTTGGATAAGTTACATCTTCACATTGCTGCTGCTGATAGGGATGGCTTTGTAGCCGGGCATAGCACACGCCTGTAGTCTCAACTACTTGGAGGCTGAGGTGGGAGGATCACTTGAACCCAGGAGGCGGAGGCCACAGTGAGCTGTGATTGCACTGCTGCACTCCAGCCTGGGCGACGGAGCGAGACCATGTTTCGAAAAAGGAAAATAAGTCTGCTGGGCGCAGTGGCTGACGCCAGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGCTCAGGAGTTTGAGAACAGCCTGGCCAACATGGTGAAACTCTGTCTCTACTGAAAATACAAAATATTAGCTAGGTGTGGTGGTGGGCACCTGTAATCCCAGCTACTTGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAAACGGAGGTTGCAGTGAGCCGAGATCACGCCATTGCACTCCAACCTGGGCGACAAGAGCGAAACTCTGCCTCAAAAAAATAAAAAGGCAAATAAGTCATGGTTTTTGGGCTGTAGCCGTATCCACCCTGCCTTGGTAAAGGCTTGTGGAGCCTGGCCCCACCCCTGCAGCTGCTCATTGGCCCTGCCTCTGCTGACCCTCGGCATGTCTCCTCCGTGCAGTGTCATGGGGCAGGTGCATCCCCCAGTGACCCTCGAGGCCCCGCTGTAGGCTCCTCCCAGGCATGGCCGGGAGCTGTGGGGGCTCCTGCGCCCTCCCTCCCTCCTGCGCCCATGTCGCCCCACAAGAGCTCTGGGCAAGACCCTCCCAGCAGCCCGGCCGTGCTGACGCCTCTCTGACCCTCCCAGCAGCCTGACTGTGCTGACGCCTCTCTGTCTCCTGTGGTGTTTTCCAG
Seq C2 exon
GATTTCTTCTTCTATTCTCTAGTCTACGACCCACAGCAGAAGACCCTGCTGGCAGATAAAGGAGAGATTCGAGTAGGAAACCGGTACCAGGCAGACATCACCGACTTGTTAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979:ENST00000331320:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.432 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(13.0=100)
A:
NA
C2:
PF0142613=BAH=PD(11.8=47.5),PF0144819=ELM2=PU(30.9=42.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development