DreINT0098349 @ danRer10
Intron Retention
Gene
ENSDARG00000007198 | mta1
Description
metastasis associated 1 [Source:ZFIN;Acc:ZDB-GENE-131121-353]
Coordinates
chr17:37633715-37637457:+
Coord C1 exon
chr17:37633715-37633778
Coord A exon
chr17:37633779-37637339
Coord C2 exon
chr17:37637340-37637457
Length
3561 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGTTCTTTTTGGCTTTTCAGGAT
3' ss Score
11.26
Exon sequences
Seq C1 exon
GGGGAAATGCTGTGTTACTCTTCTGAATGAGACGGAAGCCCTCAAATCCTATTTAGACAGAGAG
Seq A exon
GTGAGTGCCACAGCACTATGGCGAGGTGTTTGTGCGCATGTGCAAATGATTTGTTTGCGTGAATTTGCTTTTCATTCTCTGCATCTCTGTTTACTGGATGCCTGCAATAGGGAAATGCTGATCTGACGTGTGTCTGTGTATATGTGTGTGTGAGAGAGCGTGTGTATGAAAGCTAGTTTTGAGTCCCGATCCAAATGAATAATTCAGTGTGTTGACCCAGTATGTTCCTCCTCATATTTAGTAATGAGGAGACTGGAGACTCTACAACGAGTCAAGCCAGTCCTCTAATATCTCAAACACTGGCCTTCACCGCTTCATTTGTTCGTTTGTTTGTATTAAAGGGCAGAATCATACTTTACATCAGTTTGCATATGCATAAGCTTGGTTAATGCATTGTGAGCGTTGTGTATTTGGTACGCTCTTGCCTTTTGAGGCAGTGATGCACAAAATCAAGCTTTGCATTAGTTTTTTTTTATGATGTACAGTGAAGATCAAAATCCGAGAACATTCTACACTTTCCTATATTAAGGCCACTGCTTTCCTAAGAGATCTAAAAGAGCAATTTGAGCATATATATTACGATAAGAAGTTAAATAAGACTTAAACATGGTATTTGGGAAGAAAAAAAAAACACTTACCAGGTTAGAGAAAATGGATTCCTCTTAGTTTTTTAGTGTTTGGGCTATTTACACGACAATGTTTTCAGGCAAAAACTGTAAACTTTTTATCCATTTTGCTTGTTTATTTATTCAACAGCAGCATTTTGGGAATGAAAATGCACAAATCTGAAAACAGGTTACAGTTGTTGTTTTTTTTTTCTTTTTTTTTTACAGGGCGGGAGTTTTTAAATGTTTCCATTGCTATGTCTGTGTAAACACAATTAAAAACAATGACTACATTTACCCTGGACATCAGTAATCTAATTGTTTTCTTTAATCTGAGTAAGACAATAATATAATTAAGGTGTTTACATGAGTTGCTTTTTGAATGTTCCTTTCATGGTTTACATGTAATAGTATACACTACCGGAAAAAAAGTCTTGTCGTCGATCTCAGTTGTGAGGGCAACATTGATTCATTGTTGATATTTTGGAAAAGTGGCAGAAGGTAGATTTTTCAGATGAATCATCTGTTGAACTGCATCCCAATCATCACAAACACTGCAGAAGACCTGTTTGAACCCACTTGGATCCAAGATTCTCATAGAAATCAGTCAAGTTTGGTGAAAGATAAATCATGGTTTGGGGTTACATTCAGTATGGGGATGTGCAAGAGATCTGCAGAGTGGATGGCAACATTAACAGCCTGAGGTATCAAGATATTTTATTCATACTTCAGCCTCCACATCAAAGTTCCTAAAAGCAAAGAAGGTCAAGGTGCTACAGGATTGGTCAGCCCAGTCACCAGAGATGAACATTATTGAGCCTGTGTGGGGTAAGATGAGGAGGAATCTAAATGAATCTAAAAGAATCTTGATGCACTCTGACAGTCCTGCAGGAATGCTTTCTTTGCCATTCCAGATGACTTTATTAATAAGTTATTTGAGTCATTGCAGAGATGTATGAATGCAGTCCTCCAAGCTCATGGAAGTCATACACAATATTACTTATTTTTACACTCCACCATGACTTTATATTGTATACTGTACACTATTTCTGTTAAGTGACAAGACTTTTGTCTAAGCGCAGTCAGACCTTACTGTCCTAATTAAATCATTAAAAGTCAAGGCATGATCATGTTTTATTTTGGTAAAATAAGCATAATCTAGAGTCCTTTGCCTTTCATATAAGCCACATCTGATACCAAATGATCAACTAAAAGTGAAGTTATTATTTGTTGTTCCTAAGACTTGGATAGGTGACAAGACTTTTGTCAGTATATAGTTCCATTAACATCATTACATCACCATTTGGCACTTTTTTTTGGCACTGTTTGTGTTCGTCATTGCATCATATATGATTTTGGGTATTTCGTTTTTAATTTTGCAACAAGTTCAACTGGTCTCAAGTCTCAAACTGACAACAATGGATACAAATTCTCAAGCAACAGCCACCTCTGCAGTCAGATGCTATTGGGTTTTGTTCACAAATTTTTCGTTCATGTCCCCCCGACAAACTTGAAGATACTGGATGAGAGCATAGTCATCGTTTCCCACTTGCACCAAAGATGTGATTTAGTGCAAGCGGGAATAGAGCCATTCTCATTTGTTTGTCGGCAAACTGCTTTGTTTGCATCCTGTCGTAAAATGTTGAAAAGTACTAGTGCTTTTTCATTTTTGGATTTATCATTGTCGTGTGAACCTAGCCTTAATCGGGCAACAAGTAGCAGTTTTCTTAATTTTCTGATACACCCTATTTAACCAGCAGCCTGACTTTCTAGTTTTCACAGACTTTACTAAATAGGGAGTTGTACTAAAGTGTCTGAAACCATCCGAGCAACAGCAAGAAAAGTTTGTTTTCTAGATTTGTGGTTTCTAGAATGTTGTGATGCCATTTAGGTCCCCTACAAATGCTGGTCAAAAGACAAATTTACAAAAATGCTGCATAATCCAGGAAACATCAGTGGGGAATTGATTTAACACTGCAGCTGAAATTGATCACCAGTTCAGCTCTGAAAATATGGAGGTGAAATATCATGGTTTTGTTTGGGAGTTTGGCCTCTTATAGTAGAGTGAATGCAAATGTTCAGAAGCTGCTTCAGCAATATGCAGGTCCTTCCATGGGAATCCTTTAGTAACTAAATAATTATGACCAAGAAAGTCATCATAGTCATGAACTGTTCAAAAGACACAGCAGAGAAAGACTAGCAAGTCCTTTGAGACAGTAGTGATGTTCGTAAGGTACTATCAACATCAGGCGTAGTAAAACTAACGAGATGTCATAATGCTCAATATATTTTGAAGCGTTTGATGCAACCTCCACAGTTCAATATCCAGATGGCAAACACGGATTTTTAGCTTTGCATTTAAATAAAAAAATGTATTTCCCAATTCCTTTACTTACTGTGAATATGCTTGTCAGAATGTATGTCAATGTGCAGTGTTCAATCAGTGAGCACTAAATTAGGGACGCTTTCACATGAAAATGAAAGTGACATGAGCAGAAGACCAGAAGCCCACACTGTACGTTGCTATTTCTGTTTAAAGTAGATCCATTCATAGTCAAATTTTTAAGCCTTTGCTTTTTAAATATTGAACCTTAAAGCAGGAAGAGAACTCTTTGAGAAGAGCCCTCAATGACAAGCAAATTAAGTTTGCTCGTCCATGGTAAAACTCAATTATGGCCAATAATTATGAAAATGTACCTGACTTGATGAGTATTTAGTTGGCTATACCTTCGAATGCGAACTTTGGAGAACGTCTAATGTCCTTGAGACACTAGCTGTCCAATGGGGCGATGTCCATGAGACACTAGCAAAGACATTAGCAACGTTCGATTTGGCGATGTCTCTAAGACACTAACGACGTCCTGTGAGAGATCTTTTCCACAAATGATCTAATTTAGATCTTTAATGTATGTTTTGGGTCTCAGACTTACTCAAGGTGTTCTTTTTGGCTTTTCAG
Seq C2 exon
GATGCCTTTTTCTACTCGCTGGTGTACGACCCACAGCAAAAGACTCTGCTGGCTGATAAGGGAGAGATCAGAGTGGGAAACAAGTACCAGGCTGACATCACTGACCTCCTCAAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007198:ENSDART00000045583:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(14.6=100)
A:
NA
C2:
PF0142613=BAH=PD(13.2=47.5),PF0144819=ELM2=PU(30.9=42.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]