MmuINT0101427 @ mm10
Intron Retention
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113121023-113123239:+
Coord C1 exon
chr12:113121023-113121086
Coord A exon
chr12:113121087-113123116
Coord C2 exon
chr12:113123117-113123239
Length
2030 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTGTATGTGGTATTTTTCAGGAT
3' ss Score
10.34
Exon sequences
Seq C1 exon
GGGCAAGTGCAGTGTTACCCTGCTCAATGAGACGGAGTCACTCAAGTCCTACTTGGAGCGTGAG
Seq A exon
GTAAGAACTTCCCTCCTGTCTTCTGGCCTGGCCCTTTTCCTTACACTTCATCTTCTTCCTTACCCACGGTACCCTGTCACCAAGGCATTCTTTCAAGGTGTGACCTCTGTGTGGAGGTCCCCGCTCTAGGGAGTAAAATGGTTGGAGCTGGTGAGCACTTTTGCCTCACTAACAGGACTCCAGGAACAAGAGTTACCTTGTCTCCTACCTGAGTGCTTGCAAAAAAAGCCTTGTGGGTGTCACATGGGAAACAGAAACTTACACAGGCCACCTCTGTCCACAATCTAAAGTGATCCCTGTGGCCAAAGACCTTGGTCGGCACTGCTGCATTTGGGGCAGGTAGTTCTTATGTAGGGTCGCTTTGGACATAGTTAGGTGTCACGTATTAGATGTCACCCCCAAGAAACTAGTGCCTCAGAGGAAGCAAGGTCCCTTAAGATGTTGTAGGACACCACTGCTGGGAAGGTCAGGCTTCTGAGGCCAGATGGCTGGCTGGCGTGTCAGTCTCCTGGAGGATGTGGCAGTTGAAAGGGATGCTAAGCCAAGTAAGAAGCATGCATGCACTGTCTGTCTGTCTCTCTCACACACATACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTAGCTCGGGTGGCCTAGACAGGCCTCACTCACTGCGTGGCCAGGATGGAGGAATCCGTCCTACGCTCAGCTTACACCCCTTACACAGGGATCTTGTCCAAATGCAGAGCTCACTGAGAAGCCCGCGTTCTCAGCTGTAGCCCTACTCCGGCCATGCAGAGCCCAGAAAGAGTTGGGTGTGGTGGTTCAGCTTTTGCTGCGTGAGCCCCTTCAGGGCTGGGAATCTGAGCCGCCATGAGATGTGCACCTCAGCACTCCAGGCAGGGACTCACTGAGAGAGAAGGCCATCCACGTCTCAGACAGTAGCCAAGAGAAGGGAGGCCTAGCATGACCATGCCACCCAGACTCTCCTCCGCAGTGACAGGCCTGAGTCAGCACCACTGTCCACTGAGTGGACCGGACCCCTGGAAAGGCAGCAGTCGTTGACTAACACCTCCATGCAGTGGCCAAGAGGAGTTAGTGGTTTTCAGAGTGGTAGCAGGAAGAATGGAAGCTGGAAAAGGGGGAGTTGTAAGTCGTGGGGTGGAATGTGAAGGTGAGGGGCCAGCTGCCAAGGAGCTGTGGATGAGCTGGGCAATAGACCCAGGAACAGGGAGCACTGAGGGCCCAGGTGGTGACGGGAGGGAGGAGGGTGACCTTGGGCCCAGGAGACCACTACTCAGAACTAACACCATGCTGATTGTATGGAGTGAGGCTGGGCTTAAAGCCTGACACAGGAAAGATTAAGAAAGGCTGTGTTGTGTGAGTGTCAGCCTGCTGGCCAGGCACAGAGCATCAGAGTCAGCCATGAGGATGCAGCCTGGTATGGTCTGTAGCGCTGTGCTTGGTGCCTCTTCATGTGCTTGCCTGCCTTCAGCATGGAGAATTTATTCCTAGATACCATGTTTTTTTTTTTTTTTTTGCGCTCATAAGTTGATTTCCCTGCTCCCCTCCCCCCATCCCCCAGGGGTAGTGGTGATGTTTGAGACAGGTTCTCATGTAGCCCTGGCTGTCTTGGAGCGCACTATGTAGACCAGGCTGGCCTCACTCACAGAACTCTGCTTGTTTCTGATTCTCAACTGCTGGGGTTAAGGGAGTGTGCCACTGTGCCTGGCCTTCATTAGCTGAGTTTCAAAAGGTTGCAGTGACAGAAAGACAGTGGCTTTTGTGAGGGGGCTGTACACAGCAGCCTTGAGAGCCCCTCACCAGGCAAGTACCCTCTAGCAGTTTGATGAGGACTCACCTAGTCCTTACTTCACTTCTGTTGCTGCAGGGCTTCTGCCCTGGGTCCTGGACAGGCAGGACCACATCCCTCACCCTCAGAACTGGACTGGCTTGTTGGATGCAGCTAGAAGAGAACACTTGTCTGACACCTCTGTCTTGTATGTGGTATTTTTCAG
Seq C2 exon
GATTTCTTCTTCTACTCTCTAGTCTACGACCCACAGCAGAAGACCCTCCTGGCTGATAAAGGGGAAATTCGTGTAGGAAACCGGTACCAGGCTGACATCACTGACTTGCTGAAAGAAGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144:ENSMUST00000009099:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.023 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(13.0=100)
A:
NA
C2:
PF0142613=BAH=PD(11.8=46.3),PF0144819=ELM2=PU(32.7=43.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types