HsaINT0106763 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1102456-1103317:+
Coord C1 exon
chr11:1102456-1102554
Coord A exon
chr11:1102555-1103188
Coord C2 exon
chr11:1103189-1103317
Length
634 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CAGAGCTCCCTGCCCCACAGCCC
3' ss Score
5.33
Exon sequences
Seq C1 exon
GGCTTCGAACTCATGGAGGCCCCCGGGGAGTGCTGTAAGAAGTGTGAACAGACGCACTGTATCATCAAACGGCCCGACAACCAGCACGTCATCCTGAAG
Seq A exon
GTAGGTGTGCACTGCCGGCCCCGACGCGGCCGGGTTGCTTGAGCCCAGGGCAAGGCGCGGGCCACCCAGGATCCCCCAGCTGAGTCCTCCCAGTCCTGGGCGCAGCTGTGATGGGCGCCCTGGGGCTGCCATGACAAATGAGCAGGCGTCTTCAGGGCAGAAAGGGATTCTCCTGGTTCTGCGGCCCAGAAATCCATAGAGCAAAGGGCCTCAGGGCTGTGCTCCCTCGGAGGCGCTAGGCAAGGACCTTTCCCAGCCTCTGGTCACTCTAGGTGCCCCTTGGCTGTGACCACGAGGTTTCCTTCCCTGTGTCTGCCTCTCCTCTCCCTTTTAAGGATTTAGGCACCCCAAGCAGGATGATCTCATCTTAGGATCCTTCACTTAATGACACCTTCAAAGACCCCCTTTCCAAGGCAGGTCACATTCATAGATTCAGAGTTAGAACACAGACAGACCTTTGAGGGTTGTGTGGGCTCCAGGCTGGTGCCTGATGTGGGGCCCCGCCCATGTCACTTGTCCTGTGGCCCTGGGCCTCACCAGGAAGCCTCCCCGGCCAGGTGTCTCCAGGGTGTCTTCCTGGCCGGGCTGGGGCTGGGCCTGCTGCCCTCCCTCACCAGAGCTCCCTGCCCCACAG
Seq C2 exon
CCCGGGGACTTCAAGAGCGACCCGAAGAACAACTGCACATTCTTCAGCTGCGTGAAGATCCACAACCAGCTCATCTCGTCCGTCTCCAACATCACCTGCCCCAACTTTGATGCCAGCATTTGCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(21.5=42.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGAACTCATGGAGGCC
R:
GGATGCAAATGCTGGCATCAA
Band lengths:
225-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)