RnoINT0000867 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214690987-214691875:+
Coord C1 exon
chr1:214690987-214691085
Coord A exon
chr1:214691086-214691746
Coord C2 exon
chr1:214691747-214691875
Length
661 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTATCCTATTGTGTCCACAGCCT
3' ss Score
9.24
Exon sequences
Seq C1 exon
GGCTTTGAGCTTGTGGAGGTTCCTGGGGAATGTTGCAAGAAGTGCCAGCAGACCCATTGCATCATCAAGAGATCCGAGCAGCAGTACATCATTCTGAAG
Seq A exon
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCACCCATAAGCTAGTCAACCACTGCAGGCCAGGCTTAGATGACTTCGGGCTTGCCTCAGCCTAGATCCCACATTGGTATGAGTGGCCATATTTGGGTGGCTAAAAACAACATGTATGACTGCCCCACTTCCGGAGCTCTGGAGGGCAAGATCAAGGCTGGCAGAAGCTATGAGGAGTCCTTCCTGCCTCCTTTCCTTTGGGCTTCAGGCAACACTGGTTTGTGTTCGCATCGCCTCTGACGTAGCCGTCTGCCTTCTATCTGAGCCTATGTTTCCTCTTTTGTCTCTTACAAGGATGCTCATTCCTGAAGTTAGGACCTCTTTGATGTAGGGCGACTTCATCTCCAGATTATTTTCTTGAGCTTTTCAGAGATCATTTCTCCATTCAGAGTCACTTTCTAGTTCACGGGTTAGACGTAGGTTAGAGATTTTTGTGTTATCTAACCACAGGTAGGTAAGCTCCTGTCCCCAAGATTCTAATGGGTGTCACTTGCCCAGTGACTCTGGGCTTCCTTTCTGTGAACCTGTACCTCCCAGGTCTTCCTTGGCTAGCCTCTGGTGAACACTTTTGCTCATCTTTATCCTATTGTGTCCACAG
Seq C2 exon
CCTGGGGAGATACAGAAAAACCCCAACGACAGGTGCACCTTCTTCAGCTGCATGAAAATCAACAATCAGCTCATCTCTTCAGTCTCCAATATCACCTGCCCTGACTTTGACCCAAGTGATTGTGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(21.9=42.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGAGCTTGTGGAGGTT
R:
ACACAATCACTTGGGTCAAAGTCA
Band lengths:
224-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]