MmuINT0102363 @ mm9
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148938582-148939399:+
Coord C1 exon
chr7:148938582-148938680
Coord A exon
chr7:148938681-148939270
Coord C2 exon
chr7:148939271-148939399
Length
590 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TCATTCTGTTGCGTCCACAGCCT
3' ss Score
9.33
Exon sequences
Seq C1 exon
GGCTTTGAGCTTGTGGACGTCCCTGGGGAATGTTGCAAGAAGTGCCAGCAGACCCATTGCATCATCGAGGGGCCCAAGCAGCAGTACATTATTCTGAAG
Seq A exon
GTGTGTGCGCTTCTGGCTCCACCCACAAGCTAGGCAGCCACTGAGGGCAAGGCTAGGATGACTTCGGGCTTGAGTCATCCTAAATCCCACATAGCATATTTGGGTGGCTAAAAGCAACATATATGGTTGCTCCACTTCTGGAGCTCTGAAGTGTAAGATCAAGGCTGGCAGATGCTGTGAGGAGTCCTTCCTGCCTCTTCTTTGGGCTCCAGCCAATTTTGGTTTGTGTTTGAATCACCTCTGATGTAGTAGTGTCCTTCTATCTGAGCCTGTGCCTCCTCTTCTGTCTCTTATAAGGATACTCATTCCTGGAGCTAGGACCTCCTTCATGTAGGGTGACCTCATATCCAGATTATTTTCTTGAGCTTTTCAAAGATCATTTCCCCACTCAGAGTCACTTTCTAGTTCACAAGTCAGACCTAGGTTAGAGATTTCTGTGTTATGTAACCACAGTAGCTATCTCCAAGACTGTAACGGATGCCACTTGCCCAGTGACTCTGGACCTCCTTTCTGTGGCGCTTTGCCTCCCAGGTCTTCCTGGGCTGGCCTCTGGCGTACACCTGCTCATCCTCATTCTGTTGCGTCCACAG
Seq C2 exon
CCTGGGGAGATTCACAAAAACCCCAGCAACAAGTGCACCTTCTTCAGCTGCATGAAAATCAACAACCAGCTCATCTCCTCGGTCTCCAACATCACCTGTCCCGACTTCAACCCAAGTGATTGTGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-Muc2:NM_023566:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(21.5=42.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGAGCTTGTGGACGTC
R:
ACAATCACTTGGGTTGAAGTCGG
Band lengths:
222-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: