HsaINT0106855 @ hg38
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr11:1027685-1028059:-
Coord C1 exon
chr11:1027965-1028059
Coord A exon
chr11:1027818-1027964
Coord C2 exon
chr11:1027685-1027817
Length
147 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGCTGGCTCTCTGCCCGCAGAGG
3' ss Score
10.97
Exon sequences
Seq C1 exon
AGGTGTGTGCAGAGACCCACTGCTCCATGCTGCTGAGGACAGGCACGGTGTTCGAGAGGTGCCACGCCACAGTGAACCCTGCACCCTTCTACAAG
Seq A exon
GTGAGGGCCCGAGGGCGTCTTGGGAGGGCTGCAGGGGAGGCTGTGGTGGCTGACAAGGTCTCAGGCACCCAAGGGCATAGGTTTGGGACCCCCATGTCCCCAGGGCAGGGTGCCTGCCACCAGCCCATGCTGGCTCTCTGCCCGCAG
Seq C2 exon
AGGTGCGTGTACCAGGCCTGCAACTACGAGGAGACCTTTCCCCACATCTGTGCCGCCCTGGGCGACTACGTACACGCCTGCTCCTTGCGGGGCGTCCTGCTCTGGGGCTGGAGAAGCAGTGTGGACAACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956:ENST00000421673:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(40.3=96.9)
A:
NA
C2:
PF087426=C8=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGCAGAGACCCACTG
R:
TGCAGTTGTCCACACTGCTTC
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development