RnoINT0095764 @ rn6
Intron Retention
Gene
ENSRNOG00000056817 | Muc6
Description
mucin 6, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:628826]
Coordinates
chr1:214623647-214623959:-
Coord C1 exon
chr1:214623865-214623959
Coord A exon
chr1:214623780-214623864
Coord C2 exon
chr1:214623647-214623779
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TAGATGTCCTCTCCCCACAGAGA
3' ss Score
9.62
Exon sequences
Seq C1 exon
AGGTGTGTGCAGAGACCCACTGTTCCATGCTGCTGAAGAAAGGCAGTGTGTTTGAGAAGTGCCACAATGTGGTGAACCCCCAGCCCTTCTACAAG
Seq A exon
GTGGGTGCAGTGGGCACTTGAGGAGACGAGGGGAGATGGTAGCAGCGGATGCAGTCCTAGATGCCTAGATGTCCTCTCCCCACAG
Seq C2 exon
AGATGTGTGTACCAGGCCTGCAACTATGAGGAGACCTTCCCTCACATCTGTTCTGCGCTGGGGGCCTATGCCCATGCCTGCTCCTCCCGTGGCGTCCTGCTCTGGGGCTGGAGGAACAGTGTGGACAACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056817:ENSRNOT00000087497:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(40.3=96.9)
A:
NA
C2:
PF087426=C8=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTGTTTGAGAAGTGCC
R:
GTTGTCCACACTGTTCCTCCA
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]