HsaINT0106859 @ hg38
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr11:1026327-1027050:-
Coord C1 exon
chr11:1026941-1027050
Coord A exon
chr11:1026479-1026940
Coord C2 exon
chr11:1026327-1026478
Length
462 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGG
5' ss Score
5.66
3' ss Seq
GCTGACCTGCCTCCCTCCAGGTG
3' ss Score
11.05
Exon sequences
Seq C1 exon
CCTCCTGCCAGGCCCCTAAGACCTTCAAGTCCTGCAGCCAGTCCTCCGAGAACAAGTTTGGGGCAGCCTGTGCCCCCACATGCCAGATGCTGGCCACCGGTGTTGCCTGC
Seq A exon
GTAAGGGGGCGCGCGAGGAGCAGGGACAATGCCCGGGCCCCAGCTGAACCATGAGGGGGTTTCCACAGAACTCCGGGAGACCTGGCCGCATTCTGCCCTGCAGCGGGTGCCTGGGGCTGGCCACGAGGTGGAAGCGGCCCTGTGGCCAGGCAGCTGGAGGCCCCGGGGGCTCGTCTGCAGGGCTCCCTAAGGACAGTGGGCACCAGCTCGGGGAGGGTGGGCTGCCCATGTGTGGGAGTGGGTACAGCAGCCCAGCCGTGTGCACTGGGTCCCAGGACCTTCCACGAGGTGGGGGAAGCTTTGCTAAGGCAGTAAGCCCAGCTGCCCACAAAGGCCACAGAGCAGGGCTGTATTCAGGGAGAGGACCTGGGAGACACGCCGGGCAGTCTCAGAGGGGCCCAGGGCTGGGCAGCAGCTGGCTGAGGCCACCCTCCCAGGAGCTGCTGACCTGCCTCCCTCCAG
Seq C2 exon
GTGCCCACCAAGTGTGAGCCTGGCTGTGTCTGCGCCGAGGGCCTCTACGAGAATGCCGACGGGCAGTGTGTGCCCCCCGAGGAGTGCCCATGTGAGTTCTCGGGGGTCTCCTACCCTGGAGGAGCTGAGCTCCACACTGACTGCAGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956:ENST00000421673:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(53.1=91.9)
A:
NA
C2:
PF0182612=TIL=PD(43.8=54.9),PF0009313=VWC=PU(32.3=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCCAGGCCCCTA
R:
CAGGTCCTGCAGTCAGTGTG
Band lengths:
262-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development